Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq953 147 2e-30 seq948 82.4 8e-11 >seq953 Length=2188470 Score = 147 bits (162), Expect = 2e-30 Identities = 391/589 (66%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| ||| |||||| | || ||||||||| | | |||||||| ||||| || || | Sbjct 251343 GAGAGGCCCCAGTATATGTTTATGCGCGTCTCTATCGGTATCCATGGTGAGGATCTTGAT 251402 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||||||| | | ||| | ||||| || | || || | || || Sbjct 251403 GC-TGCTATTGAGACGTACAATCTCATGTCCGGAAAGTGGTTGATTCATGCTTCACCCAC 251461 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||| |||||||| || | ||||||| Sbjct 251462 TCTTTTTAATGCTGGGACGCCTATTCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAA 251521 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 |||||| || || ||||| || || |||||||| | ||||| | ||||| || | Sbjct 251522 AGATGACAGTATTGAGGGCATATATGACACGCTCAAACAATGTGCACTTATCTCAAAAAG 251581 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | ||||| |||||| | || || || | | |||| || ||||| ||| Sbjct 251582 TGCTGGTGGAATCGGTCT-CAATGTTC-ATTGTATCCGGAGTAAGGGCACTTTCATCGCT 251639 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 ||||| || |||| || | || | || || ||||| || |||||||||| || || Sbjct 251640 GGGACTAATGGCGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGTACTGCT 251699 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 ||||| || | ||||| || ||||| || | || ||||| || ||||| ||| Sbjct 251700 CGGTATGTTGATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAACCG 251759 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| | || | || ||||| | || | || ||| |||| ||| || Sbjct 251760 TGGCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCT 251819 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| || || || || || || ||||||||||| || |||||| || ||| | Sbjct 251820 CGCGCGCGAGATCTCTTCCTTGCACTTTGGATTCCGGATCTATTCATG--AAGCGTGTTG 251877 Query 53711 AAGGACGAGG--AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| | | || ||| | | ||| ||| |||| |||||||| || Sbjct 251878 AAGCAGGTGGCCCATGGACCTTTATGGACCCCCACGAATGCCCCGGTCT 251926 >seq948 Length=1705571 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || |||| ||||| ||||||||||||||||||||||| | ||||| |||||||| Sbjct 192278 ATACTCTGCGACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCTAGAGAGATATTCTCCAT 192219 Query 74522 CCAGTCGAAAGGGTTCTT 74539 | ||||||||||| || Sbjct 192218 GAAATCGAAAGGGTTATT 192201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209453928600