Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq956 176 5e-39 seq907 158 1e-33 seq434 152 6e-32 seq929 109 6e-19 seq948 89.7 6e-13 >seq956 Length=3269709 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| ||||| || || || |||||||| ||| | | Sbjct 2620661 ATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCCTTCT 2620720 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||| ||| | |||||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 2620721 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 2620780 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| || || || | ||||| ||| Sbjct 2620781 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 2620840 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | |||||||| ||||| Sbjct 2620841 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 2620887 >seq907 Length=590410 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || ||||| || || ||||| || |||||||||||| || | Sbjct 18053 AATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17994 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || |||| || ||||||||||| || || || || || ||||| || Sbjct 17993 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCA 17934 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || || || |||||||||||| | ||||||| || |||||| | ||||| || Sbjct 17933 GCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17874 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | |||||||| || || ||||| || || Sbjct 17873 TATTCAAAAGGAGTCGACACTTCACCTTGT 17844 >seq434 Length=2816 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || || |||||||| | | Sbjct 2598 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAGC 2657 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 2658 GACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCAG 2717 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || || ||||| | || |||| |||||||| | ||||| || Sbjct 2718 CAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAAC 2777 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 | || ||||| || ||||| || || || | |||||| Sbjct 2778 ATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGTCTT 2816 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || || |||||||||||| | ||||||||| | Sbjct 313 ATCATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCT 254 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | || |||||||||| ||||| ||||| || || ||||| || || Sbjct 253 AGTGACTCGATAGAGAACGTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGAT 194 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| | || || | |||||||| | ||||| Sbjct 193 CAGCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTAC 134 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || ||||| || || || | |||||||| ||||| Sbjct 133 AACATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGTCTTCGTGGTGG 84 >seq929 Length=940754 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || |||||||| ||| ||| || |||||||||| | |||| ||||||||| Sbjct 242524 GAGATTAAGGTGGCTCAGTTGTGCGGTGCCGTGGCAGAGATGTCCTCCTACCACCACGGC 242465 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 |||| ||| ||| |||||| || || || || ||| ||||||| ||| | || ||| Sbjct 242464 GAGGTGTCTCTCATGGGCACTATCATCGGTCTAGCCCAGGACTTTGTAGGTTCCAACAAC 242405 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 || || | || ||| | ||| ||||| || || || ||| |||| ||||| || | Sbjct 242404 CTCAATCTGCTGATGCCCTATGGTCAGTTCGGTACGCGTCTCTCCGGCGGCAAAGACTCC 242345 Query 32227 GCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTT 32279 || ||||||| ||||||||| |||| ||| || |||||||| || Sbjct 242344 GCTTCTGCCCGTTATATCTTCACCGCTCTCAGTCCTCTAACTCGCAAGATCTT 242292 >seq948 Length=1705571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 351/549 (64%), Gaps = 5/549 (1%) Strand=Plus/Plus Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380 |||||| ||||||||||||| | || || ||||| || ||||| || ||| | || Sbjct 191375 TGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCG 191434 Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTGGT 64439 ||||| |||| || |||||| ||| || | | | |||| || ||||| | || Sbjct 191435 AAGGACCTCACTGATTGGGAAGGCCTTAA-TGATGGCGAACGTCATTTCATATCTTATGT 191493 Query 64440 CCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTTAC 64499 | || || || ||| | ||||| || || || ||| ||| | | || ||| Sbjct 191494 TTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAACTTTTG 191553 Query 64500 AAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAAAG 64559 || || || || || || ||||| || | || || | | || | ||||| Sbjct 191554 TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAA 191613 Query 64560 TATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAA 64619 || ||| ||| | ||| || || ||||||| | | || |||||| || || Sbjct 191614 CATCCATTCCGAAATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACG 191673 Query 64620 GGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGC 64679 || |||| | || | |||| | || |||| |||| || || || ||||| Sbjct 191674 CGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGC 191733 Query 64680 CATCCGGTGGATG---AATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTG 64736 | ||||||| ||| | | | | | | |||| || | || || || Sbjct 191734 TCTTAGGTGGATTGCAAATAGGAAGGCTCCATACGCCGAGCGGCTAGTGGCATTCGCTGC 191793 Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| ||||| ||||||||||||| ||||| |||||| || ||||| || ||||| || Sbjct 191794 TGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGCGG 191853 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856 || |||||||| || | || |||||| ||||| ||||| || || |||||| Sbjct 191854 TCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACAC 191913 Query 64857 AGAATTTGC 64865 || ||||| Sbjct 191914 CGACTTTGC 191922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303577661840