Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq434 156 4e-33 seq956 132 4e-26 seq907 116 3e-21 seq861 98.7 9e-16 >seq434 Length=2816 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| |||||||| | || || || || Sbjct 311 CATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 252 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || |||||||||||||||||||| ||||| ||||| Sbjct 251 TGACTCGATAGAGAACGTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 192 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||| Sbjct 191 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAA 132 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || | || | ||| | || ||||| || Sbjct 131 CATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGTCTTCGTGGTGGGAT 81 Score = 136 bits (150), Expect = 3e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || ||| |||| |||||| | || || || || || ||||| Sbjct 2595 GCGATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCC 2654 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| | ||||||| || || |||||||| ||||| || ||||| ||||| || Sbjct 2655 AGCGACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGAC 2714 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| || || || |||||||| | ||| ||||||| ||| Sbjct 2715 CAGCAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTAC 2774 Query 27165 AACATTCAAAAGGAGTCGAC 27184 |||||||| ||||||||||| Sbjct 2775 AACATTCAGAAGGAGTCGAC 2794 >seq956 Length=3269709 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| |||||||||||||| || ||||| | || || ||||| || || || Sbjct 2620657 CGGCATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCC 2620716 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || || ||||||| || || || ||||||||||| || || || ||||| || Sbjct 2620717 TTCTGATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGA 2620776 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||| | || | || ||||| || ||||| || | | || | || || || Sbjct 2620777 TCAGCAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTA 2620836 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||| |||||||| ||| | || | || | ||| | || ||||| Sbjct 2620837 CAATATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 2620887 >seq907 Length=590410 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || || |||| || ||||| || || || Sbjct 18052 ATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17993 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || |||| || ||| |||||||| || |||||||| ||||| || ||||| Sbjct 17992 GATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCAG 17933 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || ||||| || || | ||| | ||||| ||||| Sbjct 17932 CAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAAT 17873 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||||||||||||||| Sbjct 17872 ATTCAAAAGGAGTCGAC 17856 >seq861 Length=317848 Score = 98.7 bits (108), Expect = 9e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 ||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||| | Sbjct 36646 TGTGGAACGCGGCTCAACGCCAGCTGCGCCGAGAGGGCAAAATGCACGGATTTCTGCGGA 36587 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGG 135562 |||| ||||| |||||||| | |||||| Sbjct 36586 TGTACTGGGCCAAAAAGATCCTTGAATGG 36558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913197288640