Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq434 156 4e-33
seq956 132 4e-26
seq907 116 3e-21
seq861 98.7 9e-16
>seq434
Length=2816
Score = 156 bits (172), Expect = 4e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || || || ||| |||||||| | || || || ||
Sbjct 311 CATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 252
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||||||| |||| || || || |||||||||||||||||||| ||||| |||||
Sbjct 251 TGACTCGATAGAGAACGTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 192
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||
Sbjct 191 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAA 132
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||||||||| | || | || | ||| | || ||||| ||
Sbjct 131 CATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGTCTTCGTGGTGGGAT 81
Score = 136 bits (150), Expect = 3e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044
|| |||||||| || || || ||| |||| |||||| | || || || || || |||||
Sbjct 2595 GCGATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCC 2654
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
|||| | ||||||| || || |||||||| ||||| || ||||| ||||| ||
Sbjct 2655 AGCGACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGAC 2714
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|| || ||||| || | ||| || || || |||||||| | ||| ||||||| |||
Sbjct 2715 CAGCAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTAC 2774
Query 27165 AACATTCAAAAGGAGTCGAC 27184
|||||||| |||||||||||
Sbjct 2775 AACATTCAGAAGGAGTCGAC 2794
>seq956
Length=3269709
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| |||||||||||||| || ||||| | || || ||||| || || ||
Sbjct 2620657 CGGCATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCC 2620716
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
|| || || ||||||| || || || ||||||||||| || || || ||||| ||
Sbjct 2620717 TTCTGATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGA 2620776
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
||| |||||| | || | || ||||| || ||||| || | | || | || || ||
Sbjct 2620777 TCAGCAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTA 2620836
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| ||||| |||||||| ||| | || | || | ||| | || |||||
Sbjct 2620837 CAATATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 2620887
>seq907
Length=590410
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || |||||||| || || || || |||| || ||||| || || ||
Sbjct 18052 ATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17993
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || || |||| || ||| |||||||| || |||||||| ||||| || |||||
Sbjct 17992 GATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCAG 17933
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | ||| || || ||||| || || | ||| | ||||| |||||
Sbjct 17932 CAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAAT 17873
Query 27168 ATTCAAAAGGAGTCGAC 27184
|||||||||||||||||
Sbjct 17872 ATTCAAAAGGAGTCGAC 17856
>seq861
Length=317848
Score = 98.7 bits (108), Expect = 9e-16
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533
||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||| |
Sbjct 36646 TGTGGAACGCGGCTCAACGCCAGCTGCGCCGAGAGGGCAAAATGCACGGATTTCTGCGGA 36587
Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGG 135562
|||| ||||| |||||||| | ||||||
Sbjct 36586 TGTACTGGGCCAAAAAGATCCTTGAATGG 36558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434913197288640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |