Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq948 194 1e-44 >seq948 Length=1705571 Score = 194 bits (214), Expect = 1e-44 Identities = 495/745 (66%), Gaps = 10/745 (1%) Strand=Plus/Minus Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 || || || ||||| ||| || |||| ||| || || || || ||||| | | Sbjct 192093 CGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATAAGATTG 192034 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||||| |||| ||| | ||| || ||| || | || || || | || || || Sbjct 192033 ACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATAATGTCA 191974 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CACGCAAAATC 4558 | | | | ||| | ||||| || || | | | ||| ||||| || ||||| || Sbjct 191973 TAAACTCTTTCTGCCGTAGGTTTGTTGACAATATGTTTAAA-AATAAGGCATGCAAAGTC 191915 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 || | ||||| || | ||| |||| ||||| || || | || ||||| | Sbjct 191914 GGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAG 191855 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||| | ||| || |||||||| |||| |||||||| ||||||||||| | |||||| || Sbjct 191854 ACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAAC 191795 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTT--AATCCATTT 4735 || || || || |||| || || | | ||| ||| | ||| |||||| | Sbjct 191794 AGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGC---CTTCCTATTTGCAATCCACCT 191738 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 | ||||| | ||||| || ||| || || | || | | |||||||| || Sbjct 191737 AAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAA 191678 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 ||| | ||| || | ||| || || || || || || |||||||| ||||| Sbjct 191677 GTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATG 191618 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || ||||| | || | || | |||||||| || | ||| || | | ||| ||||| Sbjct 191617 GATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTC 191558 Query 4916 GTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 ||||||||| || | | || ||||| || || || || ||||||||||||||||| | Sbjct 191557 GTTACAAAAG-TTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCAAAAAAAG 191499 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||||||||| |||||| || | ||||| || ||||| || ||| | | | | Sbjct 191498 CCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGGT 191439 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | ||||| ||||| ||||| |||||||| || || | ||||| ||||| | Sbjct 191438 CCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAACT 191379 Query 5095 ACCAAATATCAGGATACTGAATCGG 5119 |||||| ||| |||| || || || Sbjct 191378 CCCAAATGTCATGATATTGGATGGG 191354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044619133681