Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq948 201 2e-46 seq953 183 4e-41 >seq948 Length=1705571 Score = 201 bits (222), Expect = 2e-46 Identities = 436/642 (68%), Gaps = 14/642 (2%) Strand=Plus/Minus Query 48121 ACAA-ATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATT 48179 |||| ||||||||| || | |||||||| || || || |||||||| | || || Sbjct 191946 ACAATATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATC 191887 Query 48180 AATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCC 48239 || ||||| || ||||| || ||||| || || || || ||||||||||| || | Sbjct 191886 AACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAA 191827 Query 48240 GCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCG 48299 || || || ||||||||||| | |||||| || || || ||||| || | ||| || Sbjct 191826 GCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCG 191767 Query 48300 TAACTGG---CTTCGT-TGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACAC 48354 || ||| |||| | | || ||||||| | |||||||| || ||||| |||| Sbjct 191766 TA--TGGAGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACAC 191709 Query 48355 AAGGCATTGTTTCTATAGCATTAAAGAGAAAGt-ttttttCATTGCTATCTTTAACGTAA 48413 | |||| || | | || ||||| | ||||| || || || ||| |||| ||| Sbjct 191708 ATGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTG-GATCCTTAATGTAG 191650 Query 48414 GTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCG 48473 ||||| || | |||| ||||||||||| || || ||||| | || | || | ||| Sbjct 191649 GTATCAATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCG 191590 Query 48474 TAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTCT 48531 |||||||| | || || | || || || || ||||||| |||| || | ||| | Sbjct 191589 TAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTT 191532 Query 48532 CATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTT 48591 |||| || || |||||||| || |||||||| || || |||| || |||| || Sbjct 191531 CATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTT 191472 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 || | | || | ||| ||| ||| || || | | ||| ||||| ||| ||| Sbjct 191471 CGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTG 191412 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGA 48711 ||||||| || || | ||||| || || | | ||| || ||| |||||||| || | Sbjct 191411 TCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCA 191352 Query 48712 AAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCCA 48753 | ||| ||||| ||||| |||| | |||||||| Sbjct 191351 TCACAACGAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq953 Length=2188470 Score = 183 bits (202), Expect = 4e-41 Identities = 419/626 (67%), Gaps = 6/626 (1%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 || || ||| ||||||||| || ||||||| ||| | | || |||||||| | ||| Sbjct 251965 GTGTAGAGCGTTTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGGGCATTCGTGGGGG 251906 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||| || | ||| ||| || | | ||| || ||||| || ||||| || ||||| Sbjct 251905 TCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCCGGAATCCAA 251846 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || |||| || |||||||| | | | ||| || || || ||||| | || Sbjct 251845 AGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCC 251786 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | ||||| || | ||| | |||||| ||||| ||||| || || | | || ||||| Sbjct 251785 ACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGC 251726 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| || |||||||| | ||| | || || | || | || | | ||| || | | Sbjct 251725 TTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGTACA 251666 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC-GAATATTACT 78271 | |||||| || ||||| || |||| || || | || ||| | | | ||| | Sbjct 251665 AGACCGTTGGACTCGCCATTAGTCCCAGCGATGAAAGTGCC-CTTACTCCGGATACAATG 251607 Query 78272 AA--TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 || | || | || ||||| || || | || || || || || || |||| | || Sbjct 251606 AACATTGAGA--CCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTG 251549 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 || || || ||||| ||||||||||| |||| |||| | ||| ||||| ||||| ||| Sbjct 251548 TCATATATGCCCTCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGA 251489 Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449 || | || || |||||||| | || || || ||||| | ||||| ||| | || Sbjct 251488 GGAATAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAACCACTTTCCGGAC 251429 Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACA 78509 | |||||||| || |||||||| | || | ||| ||| || || | | || Sbjct 251428 ATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATACCGATAGAGACG 251369 Query 78510 CGCATCAACATATGCTGAGGTCTTTC 78535 ||||| ||||||| ||| || || || Sbjct 251368 CGCATAAACATATACTGGGGCCTCTC 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660490024480