Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq948 268 1e-66 seq882 84.2 3e-11 >seq948 Length=1705571 Score = 268 bits (296), Expect = 1e-66 Identities = 518/754 (69%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 46500 ACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 ||||||||| || || || ||||| |||| || || || ||||| || |||||| | Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 46560 GACAGCATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGT 46617 || || ||| ||| | || || ||| |||| | | ||| | | | |||| Sbjct 191995 AACCGCCTCCCTCATAATGTC-ATAA-ACTCTTTCTGCCGTAGGTTTGTTGACAATATGT 191938 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 ||||| || | |||||||| || || ||||||||||| | || || || ||||| Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 || ||||| || ||||| || || ||||| ||||||||||| |||| || || || Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG-- 46795 ||||||||||| | |||||| ||||| |||||||| || || | ||| |||| ||| Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTA--TGGAG 191760 Query 46796 -CATC--ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTG 46852 | || ||| ||||||||| |||||||||| || || || ||||| |||| | Sbjct 191759 CCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 191700 Query 46853 TTTCTATAGCATTAAAGAGAAAGtttttttCATCACT--ATCTTTAACATATGTATCTAT 46910 | | | || ||||| | ||||| ||| |||| ||| |||| || ||||| || Sbjct 191699 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 191642 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 | |||| |||||||| ||||| |||||||| | || | || | ||||||||||| Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582 Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACT 47028 | || || | ||| || || || ||||||| |||| || | ||| ||||| || Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACG 191524 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || |||||||| || |||||||| ||||| |||| || |||| ||| | | Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 191464 Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 | || | ||| ||| ||| || || | | ||| ||||| ||| ||||||| || Sbjct 191463 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 191404 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACA 47208 || || | ||||| || || | | ||| || ||| |||||||||| || | | ||| Sbjct 191403 GAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACG 191344 Query 47209 AATCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242 ||||| ||||| |||||| |||||||| Sbjct 191343 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq882 Length=407576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 170098 TATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCG 170157 |||||||| ||||||||| ||| | || || |||| |||||| | | |||| | Sbjct 167930 TATGAGCCGGGAAAACGTCACTGGATAAAGATTAAGAAGGACTACCTCGGTCAGGGAACC 167989 Query 170158 ATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGGT 170217 ||||| ||||| || || | |||| ||||| || || ||||||||||||| ||||||| Sbjct 167990 ATGGCCGATTCAGCTGACCTCATAGTCTTGGGCGCTTACTATGGAAAAGGAAGAAAGGGT 168049 Query 170218 G 170218 | Sbjct 168050 G 168050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925871522240