Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq907 125 2e-23 seq434 105 2e-17 >seq907 Length=590410 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || ||||| ||||| || ||||| ||||| || ||||| |||| || |||| | Sbjct 17835 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17894 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| |||| || || ||||||||||||| ||||| || | || || ||||| Sbjct 17895 CCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCT 17954 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || || |||||||| ||| || |||| | | || ||| ||| || ||||| Sbjct 17955 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 18011 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || || || || || ||||| | ||||||||| Sbjct 18012 GTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTT 18055 >seq434 Length=2816 Score = 105 bits (116), Expect = 2e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || || |||||||| |||| | || | || ||| Sbjct 99 AGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCT 158 Query 151953 TCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | || ||||||| |||| || || | |||||| |||| | || ||||| || | Sbjct 159 TCCAA-CTGCTTTCCCG-CGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGT 216 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || || || |||||| ||| | ||| || || | |||||||| Sbjct 217 CTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAG 276 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||||||||| |||||| Sbjct 277 TCTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || || |||||||| |||| | || | |||||| Sbjct 2809 AGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 2750 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||||| |||||||| | | |||||||| | | || || ||||| || Sbjct 2749 TCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCC 2690 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | |||| || || || || || || || Sbjct 2689 TGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTC 2630 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||||||||||| |||||| Sbjct 2629 TTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806652354147