Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq434 141 2e-28
seq956 120 6e-22
seq929 84.2 5e-11
>seq434
Length=2816
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||| | ||| || |||||||| || | || ||||| || |||
Sbjct 2788 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCGAAG 2729
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||||||||| ||||| ||||| ||||||||||| || || || || || || |
Sbjct 2728 ATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCACATTC 2669
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || ||||| | ||| || || || ||||| ||||| || ||||||||||| |||
Sbjct 2668 TCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTCACG 2609
Query 283089 AATATCTGCAt 283099
|| ||||||||
Sbjct 2608 AAGATCTGCAT 2598
Score = 107 bits (118), Expect = 4e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || ||||| || || || | || || || || ||||||||||| | |
Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || | || || || || || |||| ||| || || || |||
Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || |||||||| ||||| || || ||| | || || | ||| || || ||
Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAt 283099
|| | ||| || ||||| || || | ||||| ||||| ||||||||
Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310
>seq956
Length=3269709
Score = 120 bits (132), Expect = 6e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928
|| ||||||||| || ||||| || || || | || || || || || ||||||||
Sbjct 2620891 TGCACCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTC 2620832
Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988
|| | | || |||||||| | || || || ||||| || | ||| || || ||
Sbjct 2620831 AGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGG 2620772
Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048
|||||||||||||||||||| ||||| || ||||| | || |||| || |||| ||
Sbjct 2620771 TGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTC 2620712
Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAt 283099
||| || || || || || || || || | ||| || || || ||||||||
Sbjct 2620711 GACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661
>seq929
Length=940754
Score = 84.2 bits (92), Expect = 5e-11
Identities = 226/346 (65%), Gaps = 0/346 (0%)
Strand=Plus/Plus
Query 273591 TCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCA 273650
|| |||| || |||| | || || || || ||| || ||||||||||| | |||
Sbjct 242133 TCGTTAGTGTCGTAATTGGGGACCTTAGTGCTCCATCCTGTGCCAATACCCTCGGCTCCA 242192
Query 273651 TTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCG 273710
|| | || | | ||||| | ||| | ||| | |||||||||| || | | |||
Sbjct 242193 TTGATGAGGACCATGGGGATGACTGGCATATACCACGCGGGCTCAATCTTCTGATTATCC 242252
Query 273711 TCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGA 273770
|| | | ||| || || | | ||| || | || || | ||| || || |||||
Sbjct 242253 TCAAATAAGTAGTTTAAAATGGGATCGTCATTCTCGTGAAAGATCTTGCGAGTTAGAGGA 242312
Query 273771 TTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAA 273830
| || ||||| || || | |||| || ||| ||||| || || | || |
Sbjct 242313 CTGAGAGCGGTGAAGATATAACGGGCAGAAGCGGAGTCTTTGCCGCCGGAGAGACGCGTA 242372
Query 273831 CCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890
|| |||||||| | ||||| ||| || | ||||||| ||| || | ||||| ||
Sbjct 242373 CCGAACTGACCATAGGGCATCAGCAGATTGAGGTTGTTGGAACCTACAAAGTCCTGGGCT 242432
Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGG 273936
| | | |||||| ||| || || |||||||||||||| ||||
Sbjct 242433 AGACCGATGATAGTGCCCATGAGAGACACCTCGCCGTGGTGGTAGG 242478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046726365341878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |