Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq434 141 2e-28 seq956 120 6e-22 seq929 84.2 5e-11 >seq434 Length=2816 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | ||| || |||||||| || | || ||||| || ||| Sbjct 2788 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCGAAG 2729 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||| ||||| ||||| ||||||||||| || || || || || || | Sbjct 2728 ATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCACATTC 2669 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| | ||| || || || ||||| ||||| || ||||||||||| ||| Sbjct 2668 TCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTCACG 2609 Query 283089 AATATCTGCAt 283099 || |||||||| Sbjct 2608 AAGATCTGCAT 2598 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | || || || || ||||||||||| | | Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || | || || || || || |||| ||| || || || ||| Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| ||||| || || ||| | || || | ||| || || || Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAt 283099 || | ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310 >seq956 Length=3269709 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928 || ||||||||| || ||||| || || || | || || || || || |||||||| Sbjct 2620891 TGCACCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTC 2620832 Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 || | | || |||||||| | || || || ||||| || | ||| || || || Sbjct 2620831 AGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGG 2620772 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 |||||||||||||||||||| ||||| || ||||| | || |||| || |||| || Sbjct 2620771 TGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTC 2620712 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAt 283099 ||| || || || || || || || || | ||| || || || |||||||| Sbjct 2620711 GACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 >seq929 Length=940754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 226/346 (65%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 273591 TCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCA 273650 || |||| || |||| | || || || || ||| || ||||||||||| | ||| Sbjct 242133 TCGTTAGTGTCGTAATTGGGGACCTTAGTGCTCCATCCTGTGCCAATACCCTCGGCTCCA 242192 Query 273651 TTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCG 273710 || | || | | ||||| | ||| | ||| | |||||||||| || | | ||| Sbjct 242193 TTGATGAGGACCATGGGGATGACTGGCATATACCACGCGGGCTCAATCTTCTGATTATCC 242252 Query 273711 TCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGA 273770 || | | ||| || || | | ||| || | || || | ||| || || ||||| Sbjct 242253 TCAAATAAGTAGTTTAAAATGGGATCGTCATTCTCGTGAAAGATCTTGCGAGTTAGAGGA 242312 Query 273771 TTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAA 273830 | || ||||| || || | |||| || ||| ||||| || || | || | Sbjct 242313 CTGAGAGCGGTGAAGATATAACGGGCAGAAGCGGAGTCTTTGCCGCCGGAGAGACGCGTA 242372 Query 273831 CCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 || |||||||| | ||||| ||| || | ||||||| ||| || | ||||| || Sbjct 242373 CCGAACTGACCATAGGGCATCAGCAGATTGAGGTTGTTGGAACCTACAAAGTCCTGGGCT 242432 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGG 273936 | | | |||||| ||| || || |||||||||||||| |||| Sbjct 242433 AGACCGATGATAGTGCCCATGAGAGACACCTCGCCGTGGTGGTAGG 242478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726365341878