Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq948 163 3e-35 >seq948 Length=1705571 Score = 163 bits (180), Expect = 3e-35 Identities = 402/602 (67%), Gaps = 6/602 (1%) Strand=Plus/Minus Query 23497 TTAAACAATAAA-CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 ||||| ||||| |||||||| || || ||||||||||||| || ||||| || || Sbjct 191937 TTAAA-AATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTT 191879 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 || || | |||||||| | || || || || | |||||| || | ||||||||| Sbjct 191878 GCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGA 191819 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 || |||||||||| || |||||||| || || ||||| || || | ||| || Sbjct 191818 ACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGC 191759 Query 23676 ATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGT 23735 || || | |||||| | | ||||| || ||| ||||| | || Sbjct 191758 CTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGT 191699 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTT-TTCTTCATTATCTGTTATATATGTATCAATTA 23794 | || || || || | |||||| ||| | ||| | || || |||||||| | Sbjct 191698 CTGAACGGCGTTAAACA-AAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCA 191640 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 | | | |||||||| ||||| || ||||| | || | || | ||| |||||||| | Sbjct 191639 GAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 191580 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 ||| || | | ||| || || ||| |||| | || || |||||| ||||| || | Sbjct 191579 GAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGATTTTCATTAACGATGC 191520 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| || ||||| ||||| | |||||| ||| ||||| | ||| || | || Sbjct 191519 CATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCA-TCATTA 191461 Query 23975 ATTTTTTCC-AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 | |||| ||||| | | || || | ||||| ||||| |||||||||||||| Sbjct 191460 AGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAG 191401 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAAT 24093 || | || ||| || | |||||| |||| || ||| || || | | |||||| Sbjct 191400 GCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACGAAT 191341 Query 24094 CT 24095 || Sbjct 191340 CT 191339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521481761699800