Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq434 122 6e-23 >seq434 Length=2816 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| || |||||||| |||| || || |||| || Sbjct 101 CACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTC 160 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || || |||| |||||||||||| | || | ||||| || || Sbjct 161 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 220 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| |||| | ||| | || ||||||| ||||| |||| Sbjct 221 AATCTTAGCCTTC-ACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCT 279 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| ||||| |||||||||||||| |||||||| Sbjct 280 TTCCAGTGAGTGTCTTCACGAAGATCTGCATGAT 313 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| || |||||||| |||| || || | || || Sbjct 2807 CACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTC 2748 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||||||| || ||||||||||| ||||| |||| || | || ||||| ||| Sbjct 2747 CAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTG 2688 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||||| | | || |||||| || ||| ||||||| ||| || ||||| Sbjct 2687 AATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTT 2628 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||||||||||| ||||| Sbjct 2627 GCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986201274469