Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq907 140 8e-28 seq434 123 6e-23 >seq907 Length=590410 Score = 140 bits (154), Expect = 8e-28 Identities = 168/226 (74%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| ||||| || || |||||||| || || || ||||| || Sbjct 18055 AAAATGC---AGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGA- 18000 Query 177975 AGCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || | ||||||||||||| ||| || |||||||| |||||||| || || | Sbjct 17999 -GCCAAGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGC 17941 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || |||||||| ||||||||||| || || || | || ||||| | || || ||| Sbjct 17940 CAGATCAGCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCG 17881 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || | ||||| || || ||||| || |||||| | ||||| Sbjct 17880 ACTACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACT 17835 >seq434 Length=2816 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || || ||||| || ||||| ||| | ||| Sbjct 2601 CAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAGCGAC 2660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||||||||| || || || || || ||||||||| Sbjct 2661 ACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCAGCAA 2720 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | |||||||| | || ||| |||| || ||| | Sbjct 2721 CGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAACATT 2780 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 2781 CAGAAGGAGTCGACTCTGCACCTTGT 2806 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 307 CAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGA--GCCTAGTG 250 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || |||||||| ||||||||||| || || ||||| |||| Sbjct 249 ACTCGATAGAGAACGTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAGC 190 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| ||| | ||||| || | || ||| |||| || ||| Sbjct 189 AGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAACA 130 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| ||||| Sbjct 129 TTCAGAAGGAGTCGACTCTGCACCTTGT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716440374658