Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq434 136 4e-27 seq907 95.1 1e-14 >seq434 Length=2816 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || ||||| || ||||||||||||||| |||||||| ||||| || Sbjct 2815 AGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGG 2756 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | |||||| || ||||| |||| || || ||||| | |||| || |||| Sbjct 2755 CCATCTTCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCC 2696 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| | ||||| | | |||||||| | || ||||||| ||| Sbjct 2695 TTGTCC-TGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGT 2637 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| ||||| |||||||| Sbjct 2636 GATTGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || ||||| || ||||||||||||||| |||||||| Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || | |||||| || ||||||||||| ||||| || |||| ||| Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||| | ||| | || | ||||| | | | ||| || | ||| || Sbjct 204 ATGCCTTCTTTGT-CTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAAC 262 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || || || ||||| ||||| ||||||||| Sbjct 263 CTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCATG 311 >seq907 Length=590410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||| | || || || || || || |||||| ||||| || |||||||| Sbjct 17826 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17885 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || | ||||| || ||||| || || || || || || | || Sbjct 17886 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGT 17945 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || || ||| ||| |||| |||| ||| | | | || || | ||| || Sbjct 17946 ATACCTTCTTTATCC-TGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 18004 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | ||||| ||||| || || || || ||||||||||||||||| || Sbjct 18005 CTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTT 18055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298469688400