Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1211 91.5 3e-13 seq1083 91.5 3e-13 seq259 91.5 3e-13 seq16 86.0 1e-11 >seq1211 Length=11859842 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3177484 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3177543 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3177544 CGAGCCCCAC 3177553 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3179153 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3179212 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3179213 CGAGCCCCAC 3179222 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3180788 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3180847 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3180848 CGAGCCCCAC 3180857 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3182446 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3182505 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3182506 CGAGCCCCAC 3182515 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3184117 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3184176 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3184177 CGAGCCCCAC 3184186 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3185775 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3185834 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3185835 CGAGCCCCAC 3185844 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3187424 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3187483 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3187484 CGAGCCCCAC 3187493 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3189073 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3189132 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3189133 CGAGCCCCAC 3189142 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3190731 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3190790 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3190791 CGAGCCCCAC 3190800 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3192393 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3192452 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3192453 CGAGCCCCAC 3192462 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3194054 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3194113 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3194114 CGAGCCCCAC 3194123 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3195716 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3195775 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3195776 CGAGCCCCAC 3195785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3197377 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3197436 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3197437 CGAGCCCCAC 3197446 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3199039 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3199098 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3199099 CGAGCCCCAC 3199108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3200668 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3200727 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3200728 CGAGCCCCAC 3200737 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3202302 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3202361 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3202362 CGAGCCCCAC 3202371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 3203924 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3203983 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 3203984 CGAGCCCCAC 3203993 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 2422286 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2422345 Query 165770 CCCAC 165774 ||||| Sbjct 2422346 CCCAC 2422350 >seq1083 Length=2074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 1520 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 1461 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 1460 CGAGCCCCAC 1451 >seq259 Length=1668 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 1145 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 1086 Query 165765 CGAGCCCCAC 165774 |||||||||| Sbjct 1085 CGAGCCCCAC 1076 >seq16 Length=1894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 638 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 579 Query 165770 CCCAC 165774 ||||| Sbjct 578 CCCAC 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057807505548710