Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 91.5 3e-13
seq1083 91.5 3e-13
seq259 91.5 3e-13
seq16 86.0 1e-11
>seq1211
Length=11859842
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3177484 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3177543
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3177544 CGAGCCCCAC 3177553
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3179153 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3179212
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3179213 CGAGCCCCAC 3179222
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3180788 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3180847
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3180848 CGAGCCCCAC 3180857
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3182446 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3182505
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3182506 CGAGCCCCAC 3182515
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3184117 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3184176
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3184177 CGAGCCCCAC 3184186
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3185775 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3185834
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3185835 CGAGCCCCAC 3185844
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3187424 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3187483
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3187484 CGAGCCCCAC 3187493
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3189073 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3189132
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3189133 CGAGCCCCAC 3189142
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3190731 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3190790
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3190791 CGAGCCCCAC 3190800
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3192393 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3192452
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3192453 CGAGCCCCAC 3192462
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3194054 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3194113
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3194114 CGAGCCCCAC 3194123
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3195716 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3195775
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3195776 CGAGCCCCAC 3195785
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3197377 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3197436
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3197437 CGAGCCCCAC 3197446
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3199039 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3199098
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3199099 CGAGCCCCAC 3199108
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3200668 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3200727
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3200728 CGAGCCCCAC 3200737
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3202302 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3202361
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3202362 CGAGCCCCAC 3202371
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 3203924 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 3203983
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 3203984 CGAGCCCCAC 3203993
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 2422286 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2422345
Query 165770 CCCAC 165774
|||||
Sbjct 2422346 CCCAC 2422350
>seq1083
Length=2074
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 1520 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 1461
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 1460 CGAGCCCCAC 1451
>seq259
Length=1668
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
||| |||||| |||||||||||||||||| | ||||| ||||||| | |||||||||||
Sbjct 1145 CGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 1086
Query 165765 CGAGCCCCAC 165774
||||||||||
Sbjct 1085 CGAGCCCCAC 1076
>seq16
Length=1894
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 638 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 579
Query 165770 CCCAC 165774
|||||
Sbjct 578 CCCAC 574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057807505548710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |