Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1209 136 4e-27 >seq1209 Length=14622995 Score = 136 bits (150), Expect = 4e-27 Identities = 501/781 (64%), Gaps = 8/781 (1%) Strand=Plus/Minus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || | ||| || ||||| ||| ||||||||||||| Sbjct 7446793 GTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCG 7446734 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || | || || || | |||| | || || || Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAAT--TCGCATTCAATG 7446676 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 |||||| ||| | ||||| | ||||| | | | | ||| | | || |||| Sbjct 7446675 CTAACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGT 7446616 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| |||||| || | || || || | |||||| | ||||| Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 || || | || ||||| || || ||||| | |||||| || | || || || Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||| | || || || | || || || | || || || ||||| | || Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCT 7446436 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | | || |||||| | | |||| |||||||| | | || || ||| Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 7446376 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 | | ||| ||||| || || |||| | | || | || || ||||| || || Sbjct 7446375 TGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGA 7446316 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||||||||| || ||||| || | ||| | || | |||||||| || || Sbjct 7446315 AGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGA 7446256 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGC 17369 || || | ||||| ||||| || || |||| | ||| ||||| || ||||||| Sbjct 7446255 GCCTCGGGAATTTGGACTTC--GTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGC 7446198 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAA 17429 | || || || || ||||| ||||| | || ||||||| |||| | ||| Sbjct 7446197 CATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAA 7446138 Query 17430 GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489 | | ||| || | | || || | | ||| ||||| || |||||||| | Sbjct 7446137 GGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGG 7446078 Query 17490 CCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 | || || || || || | | ||| || |||| ||||| ||||| | |||||| ||| Sbjct 7446077 CAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAATC 7446018 Query 17550 T 17550 | Sbjct 7446017 T 7446017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537726837560