Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1209 176 5e-39 >seq1209 Length=14622995 Score = 176 bits (194), Expect = 5e-39 Identities = 502/770 (65%), Gaps = 4/770 (1%) Strand=Plus/Minus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| || |||| || | ||| || ||||| ||| ||||| ||||| Sbjct 7446799 CTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACAT 7446740 Query 16066 TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC 16125 || | ||||| || || ||||| || || | || | ||| | ||||| ||| Sbjct 7446739 TAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTC 7446680 Query 16126 TATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG 16185 || |||||| || | || || || ||| || | | | ||| | | | | Sbjct 7446679 AATGCTAACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAAT 7446620 Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 |||||||| || || || || || ||| || || ||||| || | |||||| | || Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 |||| || || | |||||||| || || ||||| | ||| || || | |||||| Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||| || |||||||| | || ||||||| || || || | || || || ||||| | Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 || | |||| |||||| | | |||| |||||||| | | ||| || Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 ||| | | ||| |||||||| || |||| ||| | || || |||||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAAT 7446320 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 ||| | | ||||||||| || || ||||| || | ||| | || | || || || || Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACG 16603 |||||||| | ||||| ||||| || || |||| | ||||| ||||| ||| Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTC--GTTACAAAAGTTCAAAGTTAGGTTTTCATTAACG 7446202 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663 || || ||||| || |||||||| ||||| | | ||||||| |||| || Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 |||| | |||||| | | || || | | ||| ||||| || ||||||||| Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082 Query 16724 CTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGG 16773 || || || || || || | | ||| || |||| ||||| ||||| Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGG 7446032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511406620108440