Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 176 5e-39
>seq1209
Length=14622995
Score = 176 bits (194), Expect = 5e-39
Identities = 502/770 (65%), Gaps = 4/770 (1%)
Strand=Plus/Minus
Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065
|||| ||| ||||| || |||| || | ||| || ||||| ||| ||||| |||||
Sbjct 7446799 CTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACAT 7446740
Query 16066 TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC 16125
|| | ||||| || || ||||| || || | || | ||| | ||||| |||
Sbjct 7446739 TAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTC 7446680
Query 16126 TATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG 16185
|| |||||| || | || || || ||| || | | | ||| | | | |
Sbjct 7446679 AATGCTAACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAAT 7446620
Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245
|||||||| || || || || || ||| || || ||||| || | |||||| | ||
Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560
Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305
|||| || || | |||||||| || || ||||| | ||| || || | ||||||
Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500
Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365
||| || |||||||| | || ||||||| || || || | || || || ||||| |
Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440
Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425
|| | |||| |||||| | | |||| |||||||| | | ||| ||
Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380
Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485
||| | | ||| |||||||| || |||| ||| | || || ||||||||
Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAAT 7446320
Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545
||| | | ||||||||| || || ||||| || | ||| | || | || || || ||
Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260
Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACG 16603
|||||||| | ||||| ||||| || || |||| | ||||| ||||| |||
Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTC--GTTACAAAAGTTCAAAGTTAGGTTTTCATTAACG 7446202
Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663
|| || ||||| || |||||||| ||||| | | ||||||| |||| ||
Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142
Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723
|||| | |||||| | | || || | | ||| ||||| || |||||||||
Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082
Query 16724 CTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGG 16773
|| || || || || || | | ||| || |||| ||||| |||||
Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGG 7446032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511406620108440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |