Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1209 309 4e-79 seq1207 176 5e-39 >seq1209 Length=14622995 Score = 309 bits (342), Expect = 4e-79 Identities = 510/727 (70%), Gaps = 23/727 (3%) Strand=Plus/Minus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 24120 ||||| || | ||||| || || || || || | | ||| | |||||| | Sbjct 7446673 AACCGCCTCCCTCATAATG--TCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--T 7446618 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 ||||||| || | ||||| |||||| ||| || || || || | || || || |||| Sbjct 7446617 GTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 7446558 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 || || ||||| || ||||| || |||||||| || |||||||| || || ||||||| Sbjct 7446557 TGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATG 7446498 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | ||||||||||||| ||||| || || || || || | || | || | || || Sbjct 7446497 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGG 7446440 Query 24301 CGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 ||| || | | |||||| | ||||||||||||| ||||| ||||| |||| Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 24413 |||| | || ||||| | | ||| ||| ||| ||| |||| || |||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCA 7446322 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||||| ||| Sbjct 7446321 ATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 7446262 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCA 24531 || | |||||||| ||| || ||||| ||||||| |||| | || |||||||| | Sbjct 7446261 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAA 7446204 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 | || || ||||||||||||||||| ||||| |||| ||| |||| |||| | Sbjct 7446203 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCAT 7446144 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | || | ||||||| ||| || || | | ||| ||||| || |||||||||| Sbjct 7446143 CATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAA 7446084 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 | || || | || || || || | | |||||||||||||||||| || || | | || Sbjct 7446083 AGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAA 7446024 Query 24712 CAAATCT 24718 ||||||| Sbjct 7446023 CAAATCT 7446017 >seq1207 Length=20116479 Score = 176 bits (194), Expect = 5e-39 Identities = 365/540 (68%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 54025 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 ||||||| | || |||| | | || || || || || || |||||||| | || | Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 ||| || | || | || | | ||| || | || ||| ||||| | |||||||||| Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008 Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATCCCCCCTGC 54321 | | ||| | | || | || ||| | | |||| ||||| || || || || Sbjct 7939007 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGC 7938950 Query 54322 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 54381 |||| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| ||||| Sbjct 7938949 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATC 7938890 Query 54382 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 54441 |||| |||| | ||| ||||| ||||| || | | || || |||||||| | Sbjct 7938889 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAG 7938830 Query 54442 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGA 54501 || || ||||| || ||||| ||||| || | |||||||||||||| ||||| | Sbjct 7938829 AGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGC 7938770 Query 54502 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 7938769 ATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712568010160