Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 181 1e-40
seq1213 122 9e-23
seq1207 91.5 2e-13
>seq1209
Length=14622995
Score = 181 bits (200), Expect = 1e-40
Identities = 388/575 (67%), Gaps = 6/575 (1%)
Strand=Plus/Plus
Query 116618 CCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACC 116677
||||| ||||| | ||||| ||| | ||||| || || | || || || |||||
Sbjct 7446032 CCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 7446091
Query 116678 GTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAG 116737
|| ||||| || || || | |||||| | || ||||| || | || || |||
Sbjct 7446092 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGCCTTAATGATGGCGAA 7446151
Query 116738 CGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAG 116797
|| |||||||| | || |||| ||||| || ||||| || |||||||| || ||
Sbjct 7446152 CGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAA 7446211
Query 116798 AATCTGG--TCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACG 116855
|| || | || | ||| | | || || || | ||||||| || || || ||||
Sbjct 7446212 AACCTAACTTTGAACTTTTG--TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACG 7446269
Query 116856 GCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915
| | || ||||| | || ||| | || || |||||||| || || || || || |
Sbjct 7446270 GGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCTCTTCTGATTGATACCT 7446329
Query 116916 ACGTGCGCTCTTCGGAGGAGAAGCTCCGTTT-GTTGAACGCCATCGAGACGATGCCGTGC 116974
|| | | | | ||| | || | ||| ||| |||||| | ||||| |||| ||
Sbjct 7446330 ACATTAAGGATCCAGTGGA-ACGCGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGT 7446388
Query 116975 GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034
|| |||| ||||| ||||| || | ||||| || || | ||| | | ||
Sbjct 7446389 GTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCT 7446448
Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094
||||| || ||||| ||||| || || || ||||| |||||||| || || || |
Sbjct 7446449 GAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCT 7446508
Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154
|| |||||||||||||| || || |||||||| ||||| || |||||||||||| | |||
Sbjct 7446509 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATC 7446568
Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189
| |||| || || || || ||| ||||| ||
Sbjct 7446569 AGCCGGGATGAAGGCCTCCACACCGATTTTGCATG 7446603
>seq1213
Length=7437389
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| |||||||| | || || || | |
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | |||| || || | ||||| |||||||| || |||| ||
Sbjct 1844634 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844692
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1844693 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844752
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||||||||| | || |||||||| ||| ||||
Sbjct 1844753 CATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCG 1844788
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| |||||||| | || || || | |
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | |||| || || | ||||| |||||||| || |||| ||
Sbjct 1838036 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1837978
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1837977 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1837918
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| ||||||||| | || || || || ||| | ||| || | |||||
Sbjct 1837917 CATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| |||||||| || || ||||| || || || || || | || || || | |
Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | ||||| | |||| || || | |||||||| ||||| || |||| ||
Sbjct 1838264 GACTCGATAGAAAACG-TGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| ||||||||| | || || || || |||
Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTG 1838115
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| |||||||| | || || || | |
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | || | || || | ||||| |||||||| || |||| ||
Sbjct 1844406 GACTCGATTGAGAATG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844464
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1844465 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844524
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| ||||||||| | || || || || |||
Sbjct 1844525 CATTCAGAAGGAGTCGACACTTCACCTGGTG 1844555
>seq1207
Length=20116479
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||||||||| || || || ||||| || || | || || || |
Sbjct 17430968 AAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17430909
Query 40747 ACCGA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
| || || || | |||| | || | ||||||| || |||||||| || || |
Sbjct 17430908 AGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCA 17430852
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| |||||||| || |||| ||| || || || | || || | ||| ||||| ||||
Sbjct 17430851 GATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGAC 17430792
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||| || || |||||| | || || || || ||
Sbjct 17430791 TACAATATTCAAAAGGAGTCGACACTTCACCTTGT 17430757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515211362227920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |