Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1209 181 1e-40 seq1213 122 9e-23 seq1207 91.5 2e-13 >seq1209 Length=14622995 Score = 181 bits (200), Expect = 1e-40 Identities = 388/575 (67%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 116618 CCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACC 116677 ||||| ||||| | ||||| ||| | ||||| || || | || || || ||||| Sbjct 7446032 CCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 7446091 Query 116678 GTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAG 116737 || ||||| || || || | |||||| | || ||||| || | || || ||| Sbjct 7446092 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGCCTTAATGATGGCGAA 7446151 Query 116738 CGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAG 116797 || |||||||| | || |||| ||||| || ||||| || |||||||| || || Sbjct 7446152 CGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAA 7446211 Query 116798 AATCTGG--TCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACG 116855 || || | || | ||| | | || || || | ||||||| || || || |||| Sbjct 7446212 AACCTAACTTTGAACTTTTG--TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACG 7446269 Query 116856 GCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915 | | || ||||| | || ||| | || || |||||||| || || || || || | Sbjct 7446270 GGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCTCTTCTGATTGATACCT 7446329 Query 116916 ACGTGCGCTCTTCGGAGGAGAAGCTCCGTTT-GTTGAACGCCATCGAGACGATGCCGTGC 116974 || | | | | ||| | || | ||| ||| |||||| | ||||| |||| || Sbjct 7446330 ACATTAAGGATCCAGTGGA-ACGCGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGT 7446388 Query 116975 GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034 || |||| ||||| ||||| || | ||||| || || | ||| | | || Sbjct 7446389 GTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCT 7446448 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| || ||||| ||||| || || || ||||| |||||||| || || || | Sbjct 7446449 GAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCT 7446508 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || |||||||||||||| || || |||||||| ||||| || |||||||||||| | ||| Sbjct 7446509 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATC 7446568 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||| || || || || ||| ||||| || Sbjct 7446569 AGCCGGGATGAAGGCCTCCACACCGATTTTGCATG 7446603 >seq1213 Length=7437389 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || | | Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| || || | ||||| |||||||| || |||| || Sbjct 1844634 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844692 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1844693 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844752 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || |||||||| ||| |||| Sbjct 1844753 CATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCG 1844788 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || | | Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| || || | ||||| |||||||| || |||| || Sbjct 1838036 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1837978 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1837977 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1837918 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || || || || ||| | ||| || | ||||| Sbjct 1837917 CATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || ||||| || || || || || | || || || | | Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||||| | |||| || || | |||||||| ||||| || |||| || Sbjct 1838264 GACTCGATAGAAAACG-TGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| | || || || || ||| Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTG 1838115 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || | | Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | || | || || | ||||| |||||||| || |||| || Sbjct 1844406 GACTCGATTGAGAATG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844464 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1844465 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844524 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| | || || || || ||| Sbjct 1844525 CATTCAGAAGGAGTCGACACTTCACCTGGTG 1844555 >seq1207 Length=20116479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||||||||| || || || ||||| || || | || || || | Sbjct 17430968 AAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17430909 Query 40747 ACCGA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | || || || | |||| | || | ||||||| || |||||||| || || | Sbjct 17430908 AGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCA 17430852 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || |||||||| || |||| ||| || || || | || || | ||| ||||| |||| Sbjct 17430851 GATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGAC 17430792 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||||| | || || || || || Sbjct 17430791 TACAATATTCAAAAGGAGTCGACACTTCACCTTGT 17430757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211362227920