Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1207 136 6e-27 >seq1207 Length=20116479 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || |||| || || || || ||||||||||| | ||| |||| ||| Sbjct 17430966 AATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17430907 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | || || | ||| ||||||||| |||||||| |||||||| || ||||| Sbjct 17430906 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCA 17430847 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| || || || || |||||||||||| | ||||| || || || || Sbjct 17430846 GCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17430787 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||||||| || || || | || | ||| || | ||||||| || || ||| Sbjct 17430786 TATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGGCATGAAA 17430732 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || ||||||||||||||| | ||| | || | | Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| |||| || |||||||| || || ||||| ||||| ||||| Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || || || |||||| | || | ||| || || ||| Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || ||||| | || | || | ||| | || |||||| Sbjct 13120264 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGT 13120217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755444507625600