Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 136 6e-27
>seq1207
Length=20116479
Score = 136 bits (150), Expect = 6e-27
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || |||| || || || || ||||||||||| | ||| |||| |||
Sbjct 17430966 AATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17430907
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||| | || || | ||| ||||||||| |||||||| |||||||| || |||||
Sbjct 17430906 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCA 17430847
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | ||||| || || || || |||||||||||| | ||||| || || || ||
Sbjct 17430846 GCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17430787
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772
||||||||| || || || | || | ||| || | ||||||| || || |||
Sbjct 17430786 TATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGGCATGAAA 17430732
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || || || ||||||||||||||| | ||| | || | |
Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||| | ||| ||| |||| || |||||||| || || ||||| ||||| |||||
Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | ||||||||||| || || || || |||||| | || | ||| || || |||
Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
||||| || || ||||| | || | || | ||| | || ||||||
Sbjct 13120264 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGT 13120217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755444507625600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |