Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 122 8e-23
seq1213 95.1 1e-14
>seq1207
Length=20116479
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| |||| ||| | || | ||| | ||| ||||| |||||||| ||||| |||
Sbjct 17430739 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17430798
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || ||| |||||| | || || |||||| |||| || || |||||||| || |||
Sbjct 17430799 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGT 17430858
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||| || || |||||| ||| || | |||| || || | ||| |||
Sbjct 17430859 ATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACC 17430918
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | ||||| || || ||||||||||| |||||||||||
Sbjct 17430919 TCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||| | || ||||| || ||||| ||||| || | | ||| ||||||
Sbjct 13120235 CACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTC 13120294
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| || ||||| | || |||||||||||||| || || || ||||||||||||
Sbjct 13120295 CAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTG 13120354
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | || | | || | ||||||||| | || | |||||
Sbjct 13120355 AATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTT 13120414
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| || |||||||| || ||||||||||||
Sbjct 13120415 GCCAGTAAGAGTTTTCACGAAAATCTGCATG 13120445
>seq1213
Length=7437389
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | ||| ||||| || ||||||||||| ||| | ||||| || ||
Sbjct 1844555 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844496
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| | || |||||||||||||| || || ||||||||||||||
Sbjct 1844495 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844436
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | || | | ||| | ||| ||||| | || | || ||
Sbjct 1844435 GATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844376
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || ||||| || |||||
Sbjct 1844375 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | ||| ||||| || ||||| ||||| ||| | ||||| || ||
Sbjct 1844327 CACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844268
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| | || |||||||||||||| || || ||||||||||||||
Sbjct 1844267 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844208
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | || | | ||| | ||| ||||| | || | || ||
Sbjct 1844207 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844148
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || ||||| ||||||||
Sbjct 1844147 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | ||| ||||| || ||||||||||| ||| | ||||| || ||
Sbjct 1838115 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1838174
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| | || |||||||||||||| || || ||||| || ||||||
Sbjct 1838175 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 1838234
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | ||| | | ||| | ||| ||||| | || | || ||
Sbjct 1838235 TATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTT 1838294
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || || |||||||||
Sbjct 1838295 TCCAGTGAGTGTCTTCACGAATATCTGCATG 1838325
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || ||||||||||| ||| | ||||| || ||
Sbjct 1837887 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1837946
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| | || |||||||||||||| || || ||||||||||||||
Sbjct 1837947 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1838006
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | || | | ||| | ||| ||||| | || | || ||
Sbjct 1838007 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1838066
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || ||||| || |||||
Sbjct 1838067 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433823965346164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |