Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 123 3e-23
seq1207 89.7 6e-13
seq1211 86.0 7e-12
>seq1213
Length=7437389
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| || | ||| |||||| ||||||||||| || | || || || |
Sbjct 1844333 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCC 1844274
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || |||||||| || |||||||| || | || | || ||||||
Sbjct 1844273 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844214
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || || | || | | || ||| |||| ||||| || | |||||
Sbjct 1844213 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844154
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || |||||||| |||||||| |||||
Sbjct 1844153 GGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| || | ||| |||||| ||||| ||||| || | || || || |
Sbjct 1844561 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1844502
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || |||||||| || |||||||| || | || | || ||||||
Sbjct 1844501 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844442
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || ||| | || | | || ||| |||| ||||| || | |||||
Sbjct 1844441 GTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844382
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || || ||||| ||||||||||||||
Sbjct 1844381 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||| | ||||| || |||||| || || ||||| || | || || || |
Sbjct 1844789 ACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCC 1844730
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || |||||||| || |||||||| || | || | || ||||||
Sbjct 1844729 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844670
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || || | || | | || ||| |||| ||||| || | |||||
Sbjct 1844669 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844610
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || || ||||| ||||||||||||||
Sbjct 1844609 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || |||| || | |||||| || |||||
Sbjct 1837905 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1837964
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||| || |||||||| || | || | || |||||||||| ||| || || | |
Sbjct 1837965 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1838024
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || ||| |||| ||||| || | |||||||| ||||| || || ||||| ||
Sbjct 1838025 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1838084
Query 43172 AAAGATTTGCAT 43183
||||||||||||
Sbjct 1838085 AAAGATTTGCAT 1838096
>seq1207
Length=20116479
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||||||||| || | || || ||| | || |||| ||||||||||||||
Sbjct 17430774 CTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAA 17430833
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || || ||||| || | ||| | | ||| || ||| ||| |||| | ||| |
Sbjct 17430834 GATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCC-TGAATTTTCGCTTTCACGT 17430892
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
|| | | | || || | || || || | || || ||||| || || || || ||||
Sbjct 17430893 TCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTA 17430952
Query 43171 CAAAGATTTGCATTTT 43186
| || || ||||||||
Sbjct 17430953 CGAAAATCTGCATTTT 17430968
>seq1211
Length=11859842
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3178520 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3178461
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3178460 TACTATCGCGGA 3178449
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3181821 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3181762
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3181761 TACTATCGCGGA 3181750
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3183479 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3183420
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3183419 TACTATCGCGGA 3183408
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3185143 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3185084
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3185083 TACTATCGCGGA 3185072
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3186808 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3186749
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3186748 TACTATCGCGGA 3186737
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3188457 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3188398
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3188397 TACTATCGCGGA 3188386
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3190100 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3190041
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3190040 TACTATCGCGGA 3190029
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3191756 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3191697
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3191696 TACTATCGCGGA 3191685
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3193420 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3193361
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3193360 TACTATCGCGGA 3193349
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3195081 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3195022
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3195021 TACTATCGCGGA 3195010
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3196746 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3196687
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3196686 TACTATCGCGGA 3196675
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3198407 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3198348
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3198347 TACTATCGCGGA 3198336
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3200072 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3200013
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3200012 TACTATCGCGGA 3200001
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3201698 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3201639
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3201638 TACTATCGCGGA 3201627
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 3203330 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3203271
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 3203270 TACTATCGCGGA 3203259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571808901224760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |