Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1213 123 3e-23 seq1207 89.7 6e-13 seq1211 86.0 7e-12 >seq1213 Length=7437389 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| || | ||| |||||| ||||||||||| || | || || || | Sbjct 1844333 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCC 1844274 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || |||||||| || |||||||| || | || | || |||||| Sbjct 1844273 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844214 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | || ||| |||| ||||| || | ||||| Sbjct 1844213 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844154 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || |||||||| |||||||| ||||| Sbjct 1844153 GGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| || | ||| |||||| ||||| ||||| || | || || || | Sbjct 1844561 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1844502 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || |||||||| || |||||||| || | || | || |||||| Sbjct 1844501 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844442 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||| | || | | || ||| |||| ||||| || | ||||| Sbjct 1844441 GTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844382 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||||||||| Sbjct 1844381 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | ||||| || |||||| || || ||||| || | || || || | Sbjct 1844789 ACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCC 1844730 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || |||||||| || |||||||| || | || | || |||||| Sbjct 1844729 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844670 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | || ||| |||| ||||| || | ||||| Sbjct 1844669 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844610 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||||||||| Sbjct 1844609 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || |||| || | |||||| || ||||| Sbjct 1837905 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1837964 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| || |||||||| || | || | || |||||||||| ||| || || | | Sbjct 1837965 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1838024 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| |||| ||||| || | |||||||| ||||| || || ||||| || Sbjct 1838025 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1838084 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 1838085 AAAGATTTGCAT 1838096 >seq1207 Length=20116479 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||||||||| || | || || ||| | || |||| |||||||||||||| Sbjct 17430774 CTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAA 17430833 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || ||||| || | ||| | | ||| || ||| ||| |||| | ||| | Sbjct 17430834 GATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCC-TGAATTTTCGCTTTCACGT 17430892 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | | || || | || || || | || || ||||| || || || || |||| Sbjct 17430893 TCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTA 17430952 Query 43171 CAAAGATTTGCATTTT 43186 | || || |||||||| Sbjct 17430953 CGAAAATCTGCATTTT 17430968 >seq1211 Length=11859842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3178520 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3178461 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3178460 TACTATCGCGGA 3178449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3181821 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3181762 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3181761 TACTATCGCGGA 3181750 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3183479 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3183420 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3183419 TACTATCGCGGA 3183408 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3185143 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3185084 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3185083 TACTATCGCGGA 3185072 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3186808 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3186749 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3186748 TACTATCGCGGA 3186737 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3188457 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3188398 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3188397 TACTATCGCGGA 3188386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3190100 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3190041 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3190040 TACTATCGCGGA 3190029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3191756 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3191697 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3191696 TACTATCGCGGA 3191685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3193420 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3193361 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3193360 TACTATCGCGGA 3193349 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3195081 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3195022 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3195021 TACTATCGCGGA 3195010 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3196746 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3196687 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3196686 TACTATCGCGGA 3196675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3198407 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3198348 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3198347 TACTATCGCGGA 3198336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3200072 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3200013 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3200012 TACTATCGCGGA 3200001 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3201698 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3201639 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3201638 TACTATCGCGGA 3201627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3203330 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3203271 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3203270 TACTATCGCGGA 3203259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571808901224760