Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1213 134 9e-27 seq1207 98.7 6e-16 >seq1213 Length=7437389 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | ||| || ||||| |||||||||||||| Sbjct 1837870 CCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1837929 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || ||||| || || |||||||| || || Sbjct 1837930 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1837989 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | ||||| || ||| || || Sbjct 1837990 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1838049 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||| ||||| Sbjct 1838050 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | |||||| || || | ||| || |||||||||||||||||||| Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || ||||| || || |||||||| || || Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | ||||| || ||| || || Sbjct 1844680 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844621 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||| ||||| Sbjct 1844620 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| || ||||||||||| || ||| |||| Sbjct 1844329 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCT 1844270 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| || || |||||||| || || | || ||||||||| Sbjct 1844269 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844210 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | ||||| || ||| || || || | |||||||| Sbjct 1844209 TGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTC 1844150 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||||| || || || ||||||||||||||||||| Sbjct 1844149 TTGCCAGTAAGCGTCTTCACAAAGATCTGCATCG 1844116 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| |||||||||||||| || ||| |||| Sbjct 1844557 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1844498 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| || || |||||||| || || | || ||||||||| Sbjct 1844497 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844438 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | ||||| || ||| || || || | |||||||| Sbjct 1844437 TGGATCTTC-GCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGT 1844379 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||| ||||| Sbjct 1844378 CTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| |||||||||||||| || ||| |||| Sbjct 1838113 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1838172 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| || || |||||||| || || | || || ||||| Sbjct 1838173 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCT 1838232 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | ||||||| || | | || || |||| || || || Sbjct 1838233 TGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTC 1838292 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || ||||| || |||||||| Sbjct 1838293 TTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 >seq1207 Length=20116479 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| || |||||||| || | || | || Sbjct 13120233 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 13120292 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||||||||| || ||||| || |||||||| || || | | ||||||||| Sbjct 13120293 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 13120352 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || ||||| | | ||||| || | || || ||| Sbjct 13120353 TGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTT 13120412 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||||||||| || |||||||| Sbjct 13120413 TTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067208135520