Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 178 1e-39
>seq1209
Length=14622995
Score = 178 bits (196), Expect = 1e-39
Identities = 498/759 (66%), Gaps = 14/759 (2%)
Strand=Plus/Minus
Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099
|||||| |||||| || | || | ||| || ||||| ||| || || ||||
Sbjct 7446798 TTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATT 7446739
Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159
| ||| ||||| || || | || ||||| | ||| ||||| | ||| | |||
Sbjct 7446738 AGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCA 7446679
Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT--TAACGGAGGGTT--TAA 16215
|| ||||||| || | || || || || ||| || | || ||| || | |
Sbjct 7446678 ATGCTAACCGCCTCCCTCATAATGTCA-----TAAACTCTTGCTGCCGTAGGTTTGTTGA 7446624
Query 16216 TAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTA 16274
|| |||||||| || | || |||||||| || | ||||| |||| || || |
Sbjct 7446623 CAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCA 7446564
Query 16275 ACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGG 16334
||||||| || || || |||||||| || || || || || | |||||| |||| |
Sbjct 7446563 ACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAG 7446504
Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394
||||||||||||||||||| | |||||||| || || ||||| || | |||||| |||
Sbjct 7446503 CAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGT 7446444
Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454
| | || || || | ||||| | |||||||| ||||| | ||||||
Sbjct 7446443 ATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATG 7446384
Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514
|| ||| | || ||||| ||| | | ||| ||| ||| || ||||
Sbjct 7446383 GCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTAT 7446324
Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574
| || || | | |||||||| |||||||| || || | || | || | || ||||
Sbjct 7446323 CAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAA 7446264
Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634
| || | ||| |||| ||||| ||||| |||| | | || |||||| ||||
Sbjct 7446263 AACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAA 7446204
Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTT 16692
| || ||||| || ||||||||||| || || || | | || |||| ||||
Sbjct 7446203 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGAT--ATGAAATGACGTTCGCC 7446146
Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752
||| ||| | ||| |||| | || || | |||||||| || || || |||||
Sbjct 7446145 ATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCA 7446086
Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
||| || |||||||| || || || | | ||| |||||
Sbjct 7446085 AAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTC 7446047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462504964036200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |