Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1209 178 1e-39 >seq1209 Length=14622995 Score = 178 bits (196), Expect = 1e-39 Identities = 498/759 (66%), Gaps = 14/759 (2%) Strand=Plus/Minus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 |||||| |||||| || | || | ||| || ||||| ||| || || |||| Sbjct 7446798 TTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATT 7446739 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | ||| ||||| || || | || ||||| | ||| ||||| | ||| | ||| Sbjct 7446738 AGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCA 7446679 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT--TAACGGAGGGTT--TAA 16215 || ||||||| || | || || || || ||| || | || ||| || | | Sbjct 7446678 ATGCTAACCGCCTCCCTCATAATGTCA-----TAAACTCTTGCTGCCGTAGGTTTGTTGA 7446624 Query 16216 TAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTA 16274 || |||||||| || | || |||||||| || | ||||| |||| || || | Sbjct 7446623 CAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCA 7446564 Query 16275 ACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGG 16334 ||||||| || || || |||||||| || || || || || | |||||| |||| | Sbjct 7446563 ACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAG 7446504 Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394 ||||||||||||||||||| | |||||||| || || ||||| || | |||||| ||| Sbjct 7446503 CAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGT 7446444 Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454 | | || || || | ||||| | |||||||| ||||| | |||||| Sbjct 7446443 ATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATG 7446384 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514 || ||| | || ||||| ||| | | ||| ||| ||| || |||| Sbjct 7446383 GCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTAT 7446324 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || || | | |||||||| |||||||| || || | || | || | || |||| Sbjct 7446323 CAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAA 7446264 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | || | ||| |||| ||||| ||||| |||| | | || |||||| |||| Sbjct 7446263 AACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAA 7446204 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTT 16692 | || ||||| || ||||||||||| || || || | | || |||| |||| Sbjct 7446203 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGAT--ATGAAATGACGTTCGCC 7446146 Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752 ||| ||| | ||| |||| | || || | |||||||| || || || ||||| Sbjct 7446145 ATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCA 7446086 Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||| || |||||||| || || || | | ||| ||||| Sbjct 7446085 AAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTC 7446047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462504964036200