Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1213 116 3e-21 >seq1213 Length=7437389 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||||||||||||||||| || ||| |||| ||| Sbjct 1837888 ACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1837947 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| |||||||||| ||||| || || || || | |||||||||||| Sbjct 1837948 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1838007 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||| | ||||||||| | || || |||||| Sbjct 1838008 ATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTG 1838067 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||||||||| Sbjct 1838068 CCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||||||||||||||||| || ||| |||| ||| Sbjct 1844554 ACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1844495 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| |||||||||| ||||| || || || || | |||||||||||| Sbjct 1844494 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1844435 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | ||| | ||||||||| | || || |||||| Sbjct 1844434 ATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTG 1844375 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||||||||| Sbjct 1844374 CCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395069340170557