Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1213 84.2 2e-11 >seq1213 Length=7437389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 ||| || || || || | ||| |||| |||||| || || || || |||||||||||||| Sbjct 1837866 TTAACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTC 1837925 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 || | || | |||||||| || || ||||| | || || | || |||||| Sbjct 1837926 GGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGG 1837985 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||| ||||| || || | ||| || | ||| | ||||| ||||| Sbjct 1837986 TGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTC 1838045 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||| || ||||| |||||||| Sbjct 1838046 CACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||||||||| || || || |||||||||||||||| Sbjct 1844572 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1844513 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || || ||||| | || || | || |||||| || Sbjct 1844512 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844453 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || || | | || || || | ||| | ||||| ||||| Sbjct 1844452 ATGCCCTCCTTGTCCTGGATCT-TCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCAC 1844394 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||| || ||||| |||||||| Sbjct 1844393 CTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379338373498665