Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1207 212 6e-50 seq1209 197 1e-45 seq1213 114 1e-20 >seq1207 Length=20116479 Score = 212 bits (234), Expect = 6e-50 Identities = 439/648 (68%), Gaps = 14/648 (2%) Strand=Plus/Minus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 |||||| |||||||||| ||| | || |||||||| | || || |||| || || Sbjct 7939350 CCTTCTAACTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGA 7939291 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTC 23353 ||||| ||| || ||| | |||| || | || | ||||| || || Sbjct 7939290 CCGGGGCATTCGTGGGGGTCCATAAAGGTCCA---TGGGCCACCTGCTTCAACACGCTTC 7939234 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || |||||||| ||||| || || ||| || || || || || | ||||| Sbjct 7939233 ATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCA 7939174 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || |||||||| || |||| ||| | || ||| |||| ||||||||| ||||| ||| Sbjct 7939173 CCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAA 7939114 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | |||||| || || |||| ||||||||| |||||||| || || || || || ||||| Sbjct 7939113 ATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTG 7939054 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | || | ||||||||||| |||||||||||| |||| || || | | Sbjct 7939053 AAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTG 7938994 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || || || | ||||| | || ||| || || || | ||| || || | Sbjct 7938993 CCCTTACTCCGGATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGT 7938934 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 || |||||||| || || || || ||||||||||| ||||| ||||| ||| | ||| Sbjct 7938933 GCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAA 7938874 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || ||||| || | || ||||| | || || || || || || || Sbjct 7938873 AAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGT--GGGTG--AAGC 7938818 Query 23774 GTAAAGTATCCA---TTC-GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 | || | ||| ||| ||||| ||||||||||| || || || ||||||| ||||| Sbjct 7938817 ATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTC 7938758 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 || || || ||||| | ||||||||| | ||| || || || ||||| Sbjct 7938757 ACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| ||||| || || ||||| || || | || ||||| || Sbjct 17430968 AAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17430909 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || ||| || ||| ||| || || || | ||||| || Sbjct 17430908 AGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGAT 17430849 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATT 31367 ||||| || || || |||||||| || || || || || | | |||| ||| | Sbjct 17430848 CAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTAT--CCGACT 17430791 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | || |||||||| || ||||| ||||| || || || ||||| Sbjct 17430790 ACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACT 17430748 >seq1209 Length=14622995 Score = 197 bits (218), Expect = 1e-45 Identities = 476/713 (67%), Gaps = 18/713 (3%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| || |||||||| || | || || |||||| ||||| ||| | | ||||| Sbjct 7446008 AATCCTCGAAGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAG 7446067 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || || | || || |||||||| || || ||||| || || | ||||| || | ||| Sbjct 7446068 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 7446127 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| ||| || || || | |||| || | || ||||| ||||| || Sbjct 7446128 TGGGAAGGCCTTAATGATGGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCA 7446187 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGG--TCGAAAGATTTTCACAAGAAGTGCAAG 57765 || ||||| || ||||| || || | | ||| || | || ||||| ||| Sbjct 7446188 GCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTGTAAC--GAAGTCCAAA 7446245 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | | ||||| | || |||||||| | ||||| ||| | |||||| | ||||| |||| Sbjct 7446246 TTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAA 7446305 Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACT----G 57881 |||| || || || || ||||| ||| | ||||| | | | | |||| |||| | Sbjct 7446306 TGTACTCTCTTCTGATTGATACCTACATTAAGGAT--CCA-GTGGAACGC-GACTTTTTG 7446361 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941 || ||||| | | || |||| | || ||||| || || ||| | | | ||| Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421 Query 57942 AT---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 || ||| || | ||| | | ||| ||| ||||| | || ||||| || || ||| Sbjct 7446422 ATTGCAAATAGG---AAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAA 7446478 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || | |||||||| || ||||| | || |||||| | ||||| || || || ||| Sbjct 7446479 GGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATG 7446538 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 || ||||| || || |||||||||||||| || || || || ||||| || |||||| Sbjct 7446539 CCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTT 7446598 Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178 || ||||| || | || |||||||| ||||| ||| | | | | |||||| Sbjct 7446599 GCATGCCTTATTTTTAAACATATTGTCAACAAACCTACGGCAGCAAGAGTTTATGACATT 7446658 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231 || | |||||||| || ||| || ||| |||| || || |||| || Sbjct 7446659 ATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGT 7446711 >seq1213 Length=7437389 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || ||||| | || || || ||| Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || || || ||||||||| ||| | || || || ||| Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| |||||||| || || |||||||||||| || | ||| || ||| Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||||||||| ||||| ||| | ||| | |||||| Sbjct 1837916 ATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGGT 1837869 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || ||||| | || || || ||| Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || ||| || || ||||||||| ||| | || || || ||| Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| |||||||| || || |||||||||||| || | ||| || ||| Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| ||||| ||||| ||| | || | || |||| Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1844574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || ||||| | || || || ||| Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || || || ||||||||| ||| | || || || ||| Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| |||||||| || || |||||||||||| || | ||| || ||| Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || |||||||| ||||| || || | || | |||||| Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGGT 1844801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || || || | || ||||| || Sbjct 1838325 CATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 1838266 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| || || | ||| ||||| |||||| | || || || || Sbjct 1838265 TGACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| |||||||| || || |||||||||||| || | ||| || || Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || ||||| ||||| ||||| ||| | || | || |||| Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1838096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || ||||| | || || || ||| Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || || || ||||||||| ||| | || || || ||| Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| |||||||| || || |||||||||||| || | ||| || || Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| ||||| ||||| ||| | || | || |||| Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1844346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759618778640