Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 212 6e-50
seq1209 197 1e-45
seq1213 114 1e-20
>seq1207
Length=20116479
Score = 212 bits (234), Expect = 6e-50
Identities = 439/648 (68%), Gaps = 14/648 (2%)
Strand=Plus/Minus
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|||||| |||||||||| ||| | || |||||||| | || || |||| || ||
Sbjct 7939350 CCTTCTAACTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGA 7939291
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTC 23353
||||| ||| || ||| | |||| || | || | ||||| || ||
Sbjct 7939290 CCGGGGCATTCGTGGGGGTCCATAAAGGTCCA---TGGGCCACCTGCTTCAACACGCTTC 7939234
Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413
|| || |||||||| ||||| || || ||| || || || || || | |||||
Sbjct 7939233 ATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCA 7939174
Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473
|| |||||||| || |||| ||| | || ||| |||| ||||||||| ||||| |||
Sbjct 7939173 CCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAA 7939114
Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533
| |||||| || || |||| ||||||||| |||||||| || || || || || |||||
Sbjct 7939113 ATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTG 7939054
Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593
| || | ||||||||||| |||||||||||| |||| || || | |
Sbjct 7939053 AAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTG 7938994
Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653
|| || || | ||||| | || ||| || || || | ||| || || |
Sbjct 7938993 CCCTTACTCCGGATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGT 7938934
Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713
|| |||||||| || || || || ||||||||||| ||||| ||||| ||| | |||
Sbjct 7938933 GCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAA 7938874
Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773
|| || ||||| || | || ||||| | || || || || || || ||
Sbjct 7938873 AAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGT--GGGTG--AAGC 7938818
Query 23774 GTAAAGTATCCA---TTC-GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829
| || | ||| ||| ||||| ||||||||||| || || || ||||||| |||||
Sbjct 7938817 ATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTC 7938758
Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877
|| || || ||||| | ||||||||| | ||| || || || |||||
Sbjct 7938757 ACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710
Score = 82.4 bits (90), Expect = 7e-11
Identities = 153/223 (69%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||||| ||||| || || ||||| || || | || ||||| ||
Sbjct 17430968 AAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17430909
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | || ||| || ||| ||| || || || | ||||| ||
Sbjct 17430908 AGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGAT 17430849
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATT 31367
||||| || || || |||||||| || || || || || | | |||| ||| |
Sbjct 17430848 CAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTAT--CCGACT 17430791
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
| || |||||||| || ||||| ||||| || || || |||||
Sbjct 17430790 ACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACT 17430748
>seq1209
Length=14622995
Score = 197 bits (218), Expect = 1e-45
Identities = 476/713 (67%), Gaps = 18/713 (3%)
Strand=Plus/Plus
Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587
||||| || |||||||| || | || || |||||| ||||| ||| | | |||||
Sbjct 7446008 AATCCTCGAAGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAG 7446067
Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647
|| || | || || |||||||| || || ||||| || || | ||||| || | |||
Sbjct 7446068 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 7446127
Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707
||||| ||| || || || | |||| || | || ||||| ||||| ||
Sbjct 7446128 TGGGAAGGCCTTAATGATGGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCA 7446187
Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGG--TCGAAAGATTTTCACAAGAAGTGCAAG 57765
|| ||||| || ||||| || || | | ||| || | || ||||| |||
Sbjct 7446188 GCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTGTAAC--GAAGTCCAAA 7446245
Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825
| | ||||| | || |||||||| | ||||| ||| | |||||| | ||||| ||||
Sbjct 7446246 TTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAA 7446305
Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACT----G 57881
|||| || || || || ||||| ||| | ||||| | | | | |||| |||| |
Sbjct 7446306 TGTACTCTCTTCTGATTGATACCTACATTAAGGAT--CCA-GTGGAACGC-GACTTTTTG 7446361
Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941
|| ||||| | | || |||| | || ||||| || || ||| | | | |||
Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421
Query 57942 AT---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998
|| ||| || | ||| | | ||| ||| ||||| | || ||||| || || |||
Sbjct 7446422 ATTGCAAATAGG---AAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAA 7446478
Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058
|| | |||||||| || ||||| | || |||||| | ||||| || || || |||
Sbjct 7446479 GGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATG 7446538
Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118
|| ||||| || || |||||||||||||| || || || || ||||| || ||||||
Sbjct 7446539 CCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTT 7446598
Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178
|| ||||| || | || |||||||| ||||| ||| | | | | ||||||
Sbjct 7446599 GCATGCCTTATTTTTAAACATATTGTCAACAAACCTACGGCAGCAAGAGTTTATGACATT 7446658
Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231
|| | |||||||| || ||| || ||| |||| || || |||| ||
Sbjct 7446659 ATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGT 7446711
>seq1213
Length=7437389
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| || || ||||| || ||||| | || || || |||
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| | || | || || || || ||||||||| ||| | || || || |||
Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| |||||||| || || |||||||||||| || | ||| || |||
Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||| || || ||||||||||| ||||| ||| | ||| | ||||||
Sbjct 1837916 ATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGGT 1837869
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| || || ||||| || ||||| | || || || |||
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| | || | || ||| || || ||||||||| ||| | || || || |||
Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| |||||||| || || |||||||||||| || | ||| || |||
Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || ||||| ||||| ||||| ||| | || | || ||||
Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1844574
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| || || ||||| || ||||| | || || || |||
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| | || | || || || || ||||||||| ||| | || || || |||
Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| |||||||| || || |||||||||||| || | ||| || |||
Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || |||||||| ||||| || || | || | ||||||
Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGGT 1844801
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || || || || || || | || ||||| ||
Sbjct 1838325 CATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 1838266
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | |||| || || | ||| ||||| |||||| | || || || ||
Sbjct 1838265 TGACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| |||||||| || || |||||||||||| || | ||| || ||
Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||| || || ||||| ||||| ||||| ||| | || | || ||||
Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1838096
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || ||||| || ||||| | || || || |||
Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| | || | || || || || ||||||||| ||| | || || || |||
Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| |||||||| || || |||||||||||| || | ||| || ||
Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || ||||| ||||| ||||| ||| | || | || ||||
Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTA 1844346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445759618778640
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