Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1209 84.2 4e-11 >seq1209 Length=14622995 Score = 84.2 bits (92), Expect = 4e-11 Identities = 208/315 (66%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || || ||||| |||||||| | |||||| |||| |||| || || || || ||| Sbjct 7446458 GTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGG 7446517 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| || ||||||| | ||| ||||| || |||| Sbjct 7446518 CTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGAT 7446577 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| || || ||| ||||||||| | | || ||| | | |||| | | || Sbjct 7446578 GAAGGCCTCCACACCGATTTTGCATGCCTTATTTTTAAACA---TATTGTCAACAAACCT 7446634 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 | || ||| || ||| ||| | | || || || | |||||| ||||||||| Sbjct 7446635 ACGGCAGCAAGAGTTTATGACATTATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTC 7446694 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 |||| | | ||||| || | | || ||||| || | ||| |||| ||||| Sbjct 7446695 ACAGACGCATTACCTGTCAATCTTATTGGCATGAATTGTCGCCTAATGTGCCAATACATA 7446754 Query 102218 GAATTTGTGGCAGAT 102232 ||||| || ||| Sbjct 7446755 AGGTTTGTTGCCGAT 7446769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989568569602235