Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1209 311 1e-79 seq1207 172 7e-38 >seq1209 Length=14622995 Score = 311 bits (344), Expect = 1e-79 Identities = 523/752 (70%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511 ||||||||| || || || || || || | || | || |||||||| ||||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTT 33571 ||||| | | ||||| ||| || || | | ||| | | | |||||| Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTT 7446614 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||| || | ||||| |||||| ||| || || || || | || || || ||||| Sbjct 7446613 AAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCT 7446554 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || ||||| || ||||| || |||||||| || |||||||| || ||||| ||||| || Sbjct 7446553 GAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACC 7446494 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 |||||||| | ||||| || ||||| || || | || | ||| | || || ||| Sbjct 7446493 AGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTAT--GGGGCT 7446436 Query 33752 GTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 || | | |||||| | ||||||||||||| ||||| ||||| |||| ||| Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 7446376 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCA 33864 | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| |||| Sbjct 7446375 TGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAATCA 7446318 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 |||| |||||||| |||||||||||||| | ||| | || | ||||| ||||| | Sbjct 7446317 GAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 7446258 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTAT 33982 |||||||| ||| || ||||| ||||||| |||| | || |||||||| || || Sbjct 7446257 GAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGAT 7446200 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 34042 |||||||||||||||||||| ||||| |||| ||| |||| |||| | | Sbjct 7446199 GCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT 7446140 Query 34043 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 || | ||||||| ||| || || | | ||| ||||| || ||||||||||| || Sbjct 7446139 AAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 7446080 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || | || || || || | | ||||||||||||||||||||| || | | |||||| Sbjct 7446079 GGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAA 7446020 Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 ||| ||||| || |||| | |||||||| Sbjct 7446019 TCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 >seq1207 Length=20116479 Score = 172 bits (190), Expect = 7e-38 Identities = 373/551 (68%), Gaps = 9/551 (2%) Strand=Plus/Minus Query 63263 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 ||| || | || | || | | ||| || | || |||||| || |||||||| | Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008 Query 63502 CGGAGAT-ATAGCCTCCACTGGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCT 63557 | | ||| | || | | || | | | ||| | || |||| |||| ||||| || Sbjct 7939007 CAGCGATGAAAG--TGCCCTTACTCCGGATACAATGAACATTGA--GACCAATTCCACCA 7938952 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||| ||||| | ||| ||| |||| | ||| ||||| ||||| || || || ||| Sbjct 7938951 GCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCA 7938892 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || |||| |||| | ||| ||||| ||||| || | || || || |||||||| Sbjct 7938891 TCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAA 7938832 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 | || || ||||| || ||||| ||||| || | |||||||||||||||||||| Sbjct 7938831 AGAGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCA 7938772 Query 63738 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 | || | |||| ||| || || | | ||| ||||| ||||| | ||| || || Sbjct 7938771 GCATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTC 7938712 Query 63798 TCAACAATTTT 63808 || |||||| Sbjct 7938711 TCCCAAATTTT 7938701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808018899760