Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 311 1e-79
seq1207 172 7e-38
>seq1209
Length=14622995
Score = 311 bits (344), Expect = 1e-79
Identities = 523/752 (70%), Gaps = 15/752 (2%)
Strand=Plus/Minus
Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511
||||||||| || || || || || || | || | || |||||||| |||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTT 33571
||||| | | ||||| ||| || || | | ||| | | | ||||||
Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTT 7446614
Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631
||| || | ||||| |||||| ||| || || || || | || || || |||||
Sbjct 7446613 AAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCT 7446554
Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691
|| ||||| || ||||| || |||||||| || |||||||| || ||||| ||||| ||
Sbjct 7446553 GAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACC 7446494
Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751
|||||||| | ||||| || ||||| || || | || | ||| | || || |||
Sbjct 7446493 AGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTAT--GGGGCT 7446436
Query 33752 GTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806
|| | | |||||| | ||||||||||||| ||||| ||||| |||| |||
Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 7446376
Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCA 33864
| | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| ||||
Sbjct 7446375 TGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAATCA 7446318
Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924
|||| |||||||| |||||||||||||| | ||| | || | ||||| ||||| |
Sbjct 7446317 GAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 7446258
Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTAT 33982
|||||||| ||| || ||||| ||||||| |||| | || |||||||| || ||
Sbjct 7446257 GAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGAT 7446200
Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 34042
|||||||||||||||||||| ||||| |||| ||| |||| |||| | |
Sbjct 7446199 GCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT 7446140
Query 34043 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102
|| | ||||||| ||| || || | | ||| ||||| || ||||||||||| ||
Sbjct 7446139 AAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 7446080
Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
|| | || || || || | | ||||||||||||||||||||| || | | ||||||
Sbjct 7446079 GGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAA 7446020
Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194
||| ||||| || |||| | ||||||||
Sbjct 7446019 TCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988
>seq1207
Length=20116479
Score = 172 bits (190), Expect = 7e-38
Identities = 373/551 (68%), Gaps = 9/551 (2%)
Strand=Plus/Minus
Query 63263 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321
||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | |
Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188
Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381
| ||||||| || || ||||| | || | ||| || | ||| | |||||
Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128
Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441
||||||| | || ||||| | | || || || || || || |||||||| | || |
Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068
Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501
||| || | || | || | | ||| || | || |||||| || |||||||| |
Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008
Query 63502 CGGAGAT-ATAGCCTCCACTGGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCT 63557
| | ||| | || | | || | | | ||| | || |||| |||| ||||| ||
Sbjct 7939007 CAGCGATGAAAG--TGCCCTTACTCCGGATACAATGAACATTGA--GACCAATTCCACCA 7938952
Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617
|| |||| ||||| | ||| ||| |||| | ||| ||||| ||||| || || || |||
Sbjct 7938951 GCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCA 7938892
Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677
|| |||| |||| | ||| ||||| ||||| || | || || || ||||||||
Sbjct 7938891 TCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAA 7938832
Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737
| || || ||||| || ||||| ||||| || | ||||||||||||||||||||
Sbjct 7938831 AGAGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCA 7938772
Query 63738 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797
| || | |||| ||| || || | | ||| ||||| ||||| | ||| || ||
Sbjct 7938771 GCATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTC 7938712
Query 63798 TCAACAATTTT 63808
|| ||||||
Sbjct 7938711 TCCCAAATTTT 7938701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629808018899760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |