Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1207 129 5e-25 >seq1207 Length=20116479 Score = 129 bits (142), Expect = 5e-25 Identities = 311/469 (66%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||| ||||| | |||||| | | || || |||| |||| || ||||||| || | Sbjct 7939131 TGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACA 7939072 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | || | || | | | | ||| || || | ||| || || | ||| || Sbjct 7939071 TACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTG 7939012 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA--TCGACAATCCTATTCCAC 38305 | || | || |||| |||||| || ||| | | | || | || ||||||| Sbjct 7939011 GTCCCAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTGAGA--CCAATTCCAC 7938954 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | ||| |||||| || | || |||||||| | ||||||| |||| || || ||||||| Sbjct 7938953 CAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGT 7938894 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 |||| || || | || | ||| || || ||||| ||||| || || || || |||| Sbjct 7938893 CATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAA 7938834 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || ||||| | ||||| ||||| |||| ||| || || || || Sbjct 7938833 AAAGAGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAG 7938774 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 || |||| | ||| | || || || || | ||| || | ||| | ||||| || || | Sbjct 7938773 CAGCATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCC 7938714 Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594 | || ||||| || | || ||||||||||| ||||| || Sbjct 7938713 TCTCCCAAATTTTCCCATCCCTACGGAGAAGATACGATTTCTCTAACGT 7938665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468517672566480