Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 307 1e-78
seq1207 179 5e-40
>seq1209
Length=14622995
Score = 307 bits (340), Expect = 1e-78
Identities = 508/724 (70%), Gaps = 17/724 (2%)
Strand=Plus/Minus
Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087
||||||||| || ||||| || || || | || | || |||||||| ||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGGTGGAT--ACAATAAATG 36144
||||| || | ||||| ||| ||| || || | | ||| | |||||| ||
Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAA-ACTCTTGCTGCCGTAGGTTTGTTGACAATA--TG 7446617
Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204
|||||| || | ||||| |||||| ||| || || || || | || || || |||||
Sbjct 7446616 TTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTT 7446557
Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264
| || ||||| || ||||| || |||||||| || |||||||| || || ||||||||
Sbjct 7446556 GCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGA 7446497
Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324
||||||||||||| ||||| || || || || || | || | ||| | || |||
Sbjct 7446496 ACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGC 7446437
Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381
| || | |||||| | ||||||||||||| ||||| ||||| |||| ||
Sbjct 7446436 TTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGT 7446377
Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATC 36439
|| | || ||||| | | ||| ||| ||| ||| |||| || |||||||||
Sbjct 7446376 CTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAATC 7446319
Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499
| |||| |||||||| |||||||||||||| | ||| | ||| | ||||| |||||
Sbjct 7446318 AGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAA 7446259
Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 36557
| |||||||| ||| || ||||| ||||||| |||| | || |||||||| || |
Sbjct 7446258 CGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGA 7446201
Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617
| || ||||||||||||||||| ||||| |||| ||| |||| ||||
Sbjct 7446200 TGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCAT 7446141
Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677
| || | ||||||| ||| || || | | ||| ||||| || ||||||||||| |
Sbjct 7446140 TAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGG 7446081
Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737
| || | || || || || | | |||||||||||||||||| || || | | |||||
Sbjct 7446080 AGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAA 7446021
Query 36738 ATCT 36741
||||
Sbjct 7446020 ATCT 7446017
>seq1207
Length=20116479
Score = 179 bits (198), Expect = 5e-40
Identities = 368/541 (68%), Gaps = 7/541 (1%)
Strand=Plus/Minus
Query 66056 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTC 66114
||||| | || ||||| || ||||| ||||||||||| || | || | ||||| | |
Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188
Query 66115 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174
| ||||||| || || ||||| | || | ||| || | ||| |||||
Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128
Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 66234
||||||| | || ||||| | | || || || || || || |||||||| | || |
Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068
Query 66235 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 66294
||| || | || | || | | ||| || | || ||| ||||| ||||||||||
Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008
Query 66295 CGGAGATATAGCTTCCACTTGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCTG 66351
| | ||| | | || ||| | | | ||| | || |||| |||| ||||| || |
Sbjct 7939007 CAGCGATGAAAGTGCC-CTTACTCCGGATACAATGAACATTGA--GACCAATTCCACCAG 7938951
Query 66352 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411
| |||| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| ||||
Sbjct 7938950 CACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCAT 7938891
Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 66471
| |||| |||| | ||| ||||| ||||| || | | || || |||||||| |
Sbjct 7938890 CTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAA 7938831
Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 66531
|| || ||||| || ||||| ||||| || | |||||||||||||||||||| |
Sbjct 7938830 GAGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAG 7938771
Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591
|| | |||| ||| || || | | ||| ||||| ||||| | ||| || || |
Sbjct 7938770 CATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCT 7938711
Query 66592 C 66592
|
Sbjct 7938710 C 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658162787546280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |