Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1209 307 1e-78 seq1207 179 5e-40 >seq1209 Length=14622995 Score = 307 bits (340), Expect = 1e-78 Identities = 508/724 (70%), Gaps = 17/724 (2%) Strand=Plus/Minus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGGTGGAT--ACAATAAATG 36144 ||||| || | ||||| ||| ||| || || | | ||| | |||||| || Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAA-ACTCTTGCTGCCGTAGGTTTGTTGACAATA--TG 7446617 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| |||||| ||| || || || || | || || || ||||| Sbjct 7446616 TTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTT 7446557 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 | || ||||| || ||||| || |||||||| || |||||||| || || |||||||| Sbjct 7446556 GCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGA 7446497 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||||| ||||| || || || || || | || | ||| | || ||| Sbjct 7446496 ACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGC 7446437 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | || | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 7446436 TTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGT 7446377 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATC 36439 || | || ||||| | | ||| ||| ||| ||| |||| || ||||||||| Sbjct 7446376 CTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAATC 7446319 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||| |||||||| |||||||||||||| | ||| | ||| | ||||| ||||| Sbjct 7446318 AGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAA 7446259 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 36557 | |||||||| ||| || ||||| ||||||| |||| | || |||||||| || | Sbjct 7446258 CGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGA 7446201 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||||||||||||||| ||||| |||| ||| |||| |||| Sbjct 7446200 TGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCAT 7446141 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| | Sbjct 7446140 TAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGG 7446081 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | || || || || | | |||||||||||||||||| || || | | ||||| Sbjct 7446080 AGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAA 7446021 Query 36738 ATCT 36741 |||| Sbjct 7446020 ATCT 7446017 >seq1207 Length=20116479 Score = 179 bits (198), Expect = 5e-40 Identities = 368/541 (68%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 66056 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTC 66114 ||||| | || ||||| || ||||| ||||||||||| || | || | ||||| | | Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188 Query 66115 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174 | ||||||| || || ||||| | || | ||| || | ||| ||||| Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128 Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 66234 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068 Query 66235 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 66294 ||| || | || | || | | ||| || | || ||| ||||| |||||||||| Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008 Query 66295 CGGAGATATAGCTTCCACTTGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCTG 66351 | | ||| | | || ||| | | | ||| | || |||| |||| ||||| || | Sbjct 7939007 CAGCGATGAAAGTGCC-CTTACTCCGGATACAATGAACATTGA--GACCAATTCCACCAG 7938951 Query 66352 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411 | |||| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| |||| Sbjct 7938950 CACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCAT 7938891 Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 66471 | |||| |||| | ||| ||||| ||||| || | | || || |||||||| | Sbjct 7938890 CTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAA 7938831 Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 66531 || || ||||| || ||||| ||||| || | |||||||||||||||||||| | Sbjct 7938830 GAGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAG 7938771 Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || | Sbjct 7938770 CATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCT 7938711 Query 66592 C 66592 | Sbjct 7938710 C 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162787546280