Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 91.5 1e-13
seq1209 86.0 6e-12
seq1207 86.0 6e-12
>seq1213
Length=7437389
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| || |||||||| || |||
Sbjct 1844572 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1844513
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| | ||| || || || | |||||||| |||||||| || ||
Sbjct 1844512 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844453
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || ||| | | || | | ||| | |||||||||
Sbjct 1844452 ATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844393
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | |||||||| || | || || || || |||||||||
Sbjct 1844392 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844345
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | || | || | ||||| || ||||| || |||||||| || |||
Sbjct 1837870 CCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1837929
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| | ||| || || || | |||||||| |||||||| || ||
Sbjct 1837930 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1837989
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | | ||| | |||||||||
Sbjct 1837990 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1838049
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | |||||||| || | || || || || |||||||||
Sbjct 1838050 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1838097
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| || |||||||| || |||
Sbjct 1838098 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1838157
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| | ||| || || || | |||||||| |||||||| || ||
Sbjct 1838158 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1838217
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| || || || | | ||| | | ||| | ||||| |||
Sbjct 1838218 ATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACC 1838277
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||| || || | || || |||||||| |||||
Sbjct 1838278 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||||| || | || | || ||||| || || ||||| || |||
Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| | ||| || || || | |||||||| |||||||| || ||
Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | | ||| | |||||||||
Sbjct 1844680 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844621
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | |||||||| || | || || || || |||||||||
Sbjct 1844620 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844573
>seq1209
Length=14622995
Score = 86.0 bits (94), Expect = 6e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCG 52632
|||||||| | | ||||| | ||| |||||| | | || || || || || ||
Sbjct 7446404 GATTGGGCTCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCA 7446463
Query 52633 TTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA- 52691
|| ||| || ||||| || || ||||| ||| ||||| | || |||| ||||
Sbjct 7446464 TTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAG 7446523
Query 52692 AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGG 52751
|| | ||| | | ||||| |||||||| || |||||||||||||| || || |||||
Sbjct 7446524 AAGCGTGGTC-TCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGG 7446582
Query 52752 AATGCACACAGATTTTGCGTG 52772
| ||||| |||||||| ||
Sbjct 7446583 CCTCCACACCGATTTTGCATG 7446603
>seq1207
Length=20116479
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| ||||||| | | ||| | ||||| || ||||| |||||||| || || |||
Sbjct 17430738 GCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17430797
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | | || || | || |||||||| |||| || ||||||||||| || ||
Sbjct 17430798 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGG 17430857
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
||| || ||||| || ||| |||| | ||| | | || | | || | ||||| |
Sbjct 17430858 TATACCCTCTTTATC-CTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 17430916
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| || | || || || || | ||||||||||| || |||||
Sbjct 17430917 CCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496056453626400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |