Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1213 91.5 1e-13 seq1209 86.0 6e-12 seq1207 86.0 6e-12 >seq1213 Length=7437389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || |||||||| || ||| Sbjct 1844572 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1844513 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || || | |||||||| |||||||| || || Sbjct 1844512 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844453 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || ||| | | || | | ||| | ||||||||| Sbjct 1844452 ATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844393 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| || | || || || || ||||||||| Sbjct 1844392 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||||| || ||||| || |||||||| || ||| Sbjct 1837870 CCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1837929 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || || | |||||||| |||||||| || || Sbjct 1837930 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1837989 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | | ||| | ||||||||| Sbjct 1837990 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1838049 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| || | || || || || ||||||||| Sbjct 1838050 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1838097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || |||||||| || ||| Sbjct 1838098 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1838157 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || || | |||||||| |||||||| || || Sbjct 1838158 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1838217 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| || || || | | ||| | | ||| | ||||| ||| Sbjct 1838218 ATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACC 1838277 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || |||||||| ||||| Sbjct 1838278 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || | || | || ||||| || || ||||| || ||| Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || || | |||||||| |||||||| || || Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | | ||| | ||||||||| Sbjct 1844680 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844621 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| || | || || || || ||||||||| Sbjct 1844620 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844573 >seq1209 Length=14622995 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCG 52632 |||||||| | | ||||| | ||| |||||| | | || || || || || || Sbjct 7446404 GATTGGGCTCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCA 7446463 Query 52633 TTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA- 52691 || ||| || ||||| || || ||||| ||| ||||| | || |||| |||| Sbjct 7446464 TTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAG 7446523 Query 52692 AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGG 52751 || | ||| | | ||||| |||||||| || |||||||||||||| || || ||||| Sbjct 7446524 AAGCGTGGTC-TCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGG 7446582 Query 52752 AATGCACACAGATTTTGCGTG 52772 | ||||| |||||||| || Sbjct 7446583 CCTCCACACCGATTTTGCATG 7446603 >seq1207 Length=20116479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||||| | | ||| | ||||| || ||||| |||||||| || || ||| Sbjct 17430738 GCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17430797 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | | || || | || |||||||| |||| || ||||||||||| || || Sbjct 17430798 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGG 17430857 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||| || ||||| || ||| |||| | ||| | | || | | || | ||||| | Sbjct 17430858 TATACCCTCTTTATC-CTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 17430916 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || || || || | ||||||||||| || ||||| Sbjct 17430917 CCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056453626400