Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 327 2e-84
seq1207 185 1e-41
>seq1209
Length=14622995
Score = 327 bits (362), Expect = 2e-84
Identities = 530/754 (70%), Gaps = 19/754 (3%)
Strand=Plus/Minus
Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889
||||||||| || ||||| || || || | || | || |||||||| |||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 49947
||||| || | ||||| ||| || || | | ||| | || ||||| |||
Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--TGT 7446616
Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007
||||| || | ||||| |||||| ||| || || || || | || || | ||||||
Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556
Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067
|| ||||| || ||||| || |||||||| || |||||||| || || ||||||||
Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496
Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127
||||||||||| | ||||| || || || || || || || | ||| | || ||| |
Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGGGG 7446438
Query 50128 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182
|| || | | |||||| | ||||||||||||| ||||| ||||| |||| ||
Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378
Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 50240
| | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| ||
Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAAT 7446320
Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300
|| |||| |||||||| |||||||||||||| | ||| | || | ||||| |||||
Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260
Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACT 50358
| |||||||| ||| || ||||| ||||||| ||||| | || |||||||| ||
Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202
Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT 50418
|| || ||||||||||||||||| ||||| |||| ||| ||||| ||||
Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142
Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478
| || | ||||||| ||| || || | | ||| ||||| || |||||||||||
Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082
Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538
|| || | || || || || | | ||||||||||||||||||||| || | | ||||
Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACA 7446022
Query 50539 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572
||||| ||||| || |||| | |||||||
Sbjct 7446021 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988
>seq1207
Length=20116479
Score = 185 bits (204), Expect = 1e-41
Identities = 363/535 (68%), Gaps = 4/535 (1%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
|| || ||||| || ||||| ||||||||||| || | || ||||||| | | |
Sbjct 7939242 ACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCT 7939183
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|||||| || || ||||| | || | ||| || | ||| | ||||||||||
Sbjct 7939182 TCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGT 7939123
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118
|| | || ||||| | | || ||||| || || || |||||||| | || | |||
Sbjct 7939122 TCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCA 7939063
Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178
|| | || | || | | ||| || | || ||| ||||| ||||||||||| | |
Sbjct 7939062 GTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCG 7939003
Query 80179 ATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTT 80236
|| | | || | || ||| | | |||| ||||| ||||| || || |||
Sbjct 7939002 ATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGCACTTT 7938945
Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296
| ||||| | ||| ||| |||| | ||||||||| |||||||| || || ||||| |||
Sbjct 7938944 TTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCA 7938885
Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356
| |||| | ||| ||||| ||||| || | | || || |||||||| | || |
Sbjct 7938884 TCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGG 7938825
Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416
| ||||| || ||||| ||||| |||| |||||||||||||||||||| | || |
Sbjct 7938824 GTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAA 7938765
Query 80417 TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|||| ||| || || | | ||| ||||| ||||| | ||| || || ||
Sbjct 7938764 GATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718257873335880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |