Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1209 327 2e-84 seq1207 185 1e-41 >seq1209 Length=14622995 Score = 327 bits (362), Expect = 2e-84 Identities = 530/754 (70%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| || || || | || | || |||||||| ||||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 49947 ||||| || | ||||| ||| || || | | ||| | || ||||| ||| Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--TGT 7446616 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 ||||| || | ||||| |||||| ||| || || || || | || || | |||||| Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || ||||| || ||||| || |||||||| || |||||||| || || |||||||| Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||||||||||| | ||||| || || || || || || || | ||| | || ||| | Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGGGG 7446438 Query 50128 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182 || || | | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 50240 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAAT 7446320 Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 || |||| |||||||| |||||||||||||| | ||| | || | ||||| ||||| Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260 Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACT 50358 | |||||||| ||| || ||||| ||||||| ||||| | || |||||||| || Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202 Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT 50418 || || ||||||||||||||||| ||||| |||| ||| ||||| |||| Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142 Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 || || | || || || || | | ||||||||||||||||||||| || | | |||| Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACA 7446022 Query 50539 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572 ||||| ||||| || |||| | ||||||| Sbjct 7446021 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 >seq1207 Length=20116479 Score = 185 bits (204), Expect = 1e-41 Identities = 363/535 (68%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || ||||| || ||||| ||||||||||| || | || ||||||| | | | Sbjct 7939242 ACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCT 7939183 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 |||||| || || ||||| | || | ||| || | ||| | |||||||||| Sbjct 7939182 TCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGT 7939123 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | || ||||| | | || ||||| || || || |||||||| | || | ||| Sbjct 7939122 TCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCA 7939063 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 || | || | || | | ||| || | || ||| ||||| ||||||||||| | | Sbjct 7939062 GTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCG 7939003 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTT 80236 || | | || | || ||| | | |||| ||||| ||||| || || ||| Sbjct 7939002 ATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGCACTTT 7938945 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 | ||||| | ||| ||| |||| | ||||||||| |||||||| || || ||||| ||| Sbjct 7938944 TTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCA 7938885 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | |||| | ||| ||||| ||||| || | | || || |||||||| | || | Sbjct 7938884 TCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGG 7938825 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 | ||||| || ||||| ||||| |||| |||||||||||||||||||| | || | Sbjct 7938824 GTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAA 7938765 Query 80417 TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 7938764 GATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257873335880