Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 158 1e-33
>seq1209
Length=14622995
Score = 158 bits (174), Expect = 1e-33
Identities = 520/800 (65%), Gaps = 15/800 (2%)
Strand=Plus/Minus
Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733
|| ||||| | || || ||| |||| | ||| |||| |||| || ||||| ||
Sbjct 7446801 ACCTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCAC 7446742
Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793
|||| ||||||||| || || || || ||||| | | | || | |||||| |
Sbjct 7446741 ATTAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCAT 7446682
Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA-GAAGGAGGATATTT 13852
|| || || ||||| | ||||| || |||| ||| | | | ||| | ||
Sbjct 7446681 TCAATGCTAACCGCCTCCCTCATAAT----GTCATAAACTCTTGCTGCCGTAGGTTTGTT 7446626
Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAAT 13909
| | ||||||||||| | || |||||||| || ||||| ||||| | || ||
Sbjct 7446625 GACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGAT 7446566
Query 13910 AAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13969
| ||||| || || | |||||||| | || || || || | |||||| || |
Sbjct 7446565 CAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGA 7446506
Query 13970 AGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029
||||||||| || |||||||| | || ||||| ||||| || || | || || || |
Sbjct 7446505 AGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGC 7446446
Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089
| | ||||| | || | ||||| | |||||| || | ||| || || | |
Sbjct 7446445 GTATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACA 7446386
Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTAT 14147
|| || | || || ||||| ||| | || ||| | | ||| ||||||
Sbjct 7446385 TGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTT--AATGTAG 7446328
Query 14148 GTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACC 14206
|||||||| || ||| | |||||||| || || |||||||| | || | || | ||
Sbjct 7446327 GTATCAATCAG-AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCC 7446269
Query 14207 ATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTC 14266
||||| || | ||| || | ||| ||||| |||| | | | |||||
Sbjct 7446268 GTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTC 7446209
Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326
|||||| || |||||||| ||||||||||| ||||| | | || || | | ||
Sbjct 7446208 ATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTC 7446149
Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGT 14386
||| || || || |||||| | | ||||| | | ||| ||||| ||||||||
Sbjct 7446148 GCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGT 7446089
Query 14387 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446
|||||| || |||||||| || || | |||| || || | |||| || || |
Sbjct 7446088 CCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCAT 7446029
Query 14447 AACTACAAATC-TCGAAGAT 14465
|| ||||||| |||| |||
Sbjct 7446028 CACAACAAATCTTCGAGGAT 7446009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479720702137800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |