Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1209 158 1e-33 >seq1209 Length=14622995 Score = 158 bits (174), Expect = 1e-33 Identities = 520/800 (65%), Gaps = 15/800 (2%) Strand=Plus/Minus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || ||||| | || || ||| |||| | ||| |||| |||| || ||||| || Sbjct 7446801 ACCTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCAC 7446742 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 |||| ||||||||| || || || || ||||| | | | || | |||||| | Sbjct 7446741 ATTAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCAT 7446682 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA-GAAGGAGGATATTT 13852 || || || ||||| | ||||| || |||| ||| | | | ||| | || Sbjct 7446681 TCAATGCTAACCGCCTCCCTCATAAT----GTCATAAACTCTTGCTGCCGTAGGTTTGTT 7446626 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAAT 13909 | | ||||||||||| | || |||||||| || ||||| ||||| | || || Sbjct 7446625 GACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGAT 7446566 Query 13910 AAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13969 | ||||| || || | |||||||| | || || || || | |||||| || | Sbjct 7446565 CAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGA 7446506 Query 13970 AGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||||||| || |||||||| | || ||||| ||||| || || | || || || | Sbjct 7446505 AGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGC 7446446 Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089 | | ||||| | || | ||||| | |||||| || | ||| || || | | Sbjct 7446445 GTATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACA 7446386 Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTAT 14147 || || | || || ||||| ||| | || ||| | | ||| |||||| Sbjct 7446385 TGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTT--AATGTAG 7446328 Query 14148 GTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACC 14206 |||||||| || ||| | |||||||| || || |||||||| | || | || | || Sbjct 7446327 GTATCAATCAG-AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCC 7446269 Query 14207 ATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTC 14266 ||||| || | ||| || | ||| ||||| |||| | | | ||||| Sbjct 7446268 GTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTC 7446209 Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 |||||| || |||||||| ||||||||||| ||||| | | || || | | || Sbjct 7446208 ATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTC 7446149 Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGT 14386 ||| || || || |||||| | | ||||| | | ||| ||||| |||||||| Sbjct 7446148 GCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGT 7446089 Query 14387 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 |||||| || |||||||| || || | |||| || || | |||| || || | Sbjct 7446088 CCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCAT 7446029 Query 14447 AACTACAAATC-TCGAAGAT 14465 || ||||||| |||| ||| Sbjct 7446028 CACAACAAATCTTCGAGGAT 7446009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720702137800