Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1209 145 7e-30 >seq1209 Length=14622995 Score = 145 bits (160), Expect = 7e-30 Identities = 399/607 (66%), Gaps = 6/607 (1%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 |||||||||||| | || |||||||| || ||||| ||||| | || || | || Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| || || | |||||||| | || || || || | |||||| || | ||| || Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| | || ||||| ||||| || || | ||| || || | | | Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 ||||| | |||| ||||| | |||||| || | ||| || || | | || Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 13884 TGTTTCGATTGCATTGAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCA 13941 || | | || || || ||| || ||| | | ||| |||||| |||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTT--AATGTAGGTATCA 7446322 Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||| | |||||||| || || |||||||| | || | || | || ||||| Sbjct 7446321 ATCAG-AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAA 7446263 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||| || | ||| || || |||| | | | |||||||||||| Sbjct 7446262 ACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAAC 7446203 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 || |||||||| ||||||||||| ||||| | | || || | | || ||| Sbjct 7446202 GATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATC 7446143 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || || |||||| | | ||||| | | ||| ||||| |||||||||||||| Sbjct 7446142 ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 || |||||||| || || | |||| || || | |||| || || | || || Sbjct 7446082 GGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAAC 7446023 Query 14241 AAATCTT 14247 ||||||| Sbjct 7446022 AAATCTT 7446016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581519467880