Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 145 7e-30
>seq1209
Length=14622995
Score = 145 bits (160), Expect = 7e-30
Identities = 399/607 (66%), Gaps = 6/607 (1%)
Strand=Plus/Minus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
|||||||||||| | || |||||||| || ||||| ||||| | || || | ||
Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
||| || || | |||||||| | || || || || | |||||| || | ||| ||
Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
||| || |||||||| | || ||||| ||||| || || | ||| || || | | |
Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440
Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883
||||| | |||| ||||| | |||||| || | ||| || || | | ||
Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380
Query 13884 TGTTTCGATTGCATTGAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCA 13941
|| | | || || || ||| || ||| | | ||| |||||| ||||||
Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTT--AATGTAGGTATCA 7446322
Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000
|| || ||| | |||||||| || || |||||||| | || | || | || |||||
Sbjct 7446321 ATCAG-AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAA 7446263
Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060
||| | ||| || | ||| || || |||| | | | ||||||||||||
Sbjct 7446262 ACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAAC 7446203
Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120
|| |||||||| ||||||||||| ||||| | | || || | | || |||
Sbjct 7446202 GATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATC 7446143
Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
|| || || |||||| | | ||||| | | ||| ||||| ||||||||||||||
Sbjct 7446142 ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083
Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240
|| |||||||| || || | |||| || || | |||| || || | || ||
Sbjct 7446082 GGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAAC 7446023
Query 14241 AAATCTT 14247
|||||||
Sbjct 7446022 AAATCTT 7446016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478581519467880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |