Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1209 304 2e-77 seq1207 194 2e-44 >seq1209 Length=14622995 Score = 304 bits (336), Expect = 2e-77 Identities = 527/755 (70%), Gaps = 21/755 (3%) Strand=Plus/Minus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 42050 ||||| || | ||||| || || || || || | | ||| | |||||| | Sbjct 7446673 AACCGCCTCCCTCATAATG--TCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--T 7446618 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 ||||||| || | ||||| |||||| ||| || || ||||| | || || || |||| Sbjct 7446617 GTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 7446558 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 || || ||||| || ||||| || |||||||| || |||||||| ||||| ||||||| Sbjct 7446557 TGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATG 7446498 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||||||||| | ||||| || || || || || | || | ||| | || || Sbjct 7446497 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGG 7446438 Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | || | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGAT 42345 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 7446320 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 || |||| |||||||| |||||||||||||| | ||| | || | ||||| ||||| Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACT 42463 | ||||||| || || ||||| ||||||| |||| || || ||||| || || Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || || ||||||||||||||||| ||||| |||| ||| |||| |||| || Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCG-CCATC 7446143 Query 42524 GTTAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 |||| || ||||||| ||| || || | | ||| ||||| || || |||||||| Sbjct 7446142 ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 || || | || || || || | | |||||| ||||||||||| || || | | ||| Sbjct 7446082 GGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAAC 7446023 Query 42643 AAATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677 |||||| ||||| || |||| | ||||||| Sbjct 7446022 AAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 >seq1207 Length=20116479 Score = 194 bits (214), Expect = 2e-44 Identities = 365/535 (68%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || ||||| || ||||| ||||||||||| || | || ||||||| | | | Sbjct 7939242 ACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCT 7939183 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 |||||| || || ||||| | || | ||| || | ||| | |||||||||| Sbjct 7939182 TCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGT 7939123 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || ||||| | | || || || || || || |||||||| | || | ||| Sbjct 7939122 TCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCA 7939063 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 || | || | || | | ||| || | || ||| ||||| | ||||||||||| | | Sbjct 7939062 GTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCG 7939003 Query 72262 ATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 || | | || | || || | || |||| ||||| ||||| || || ||| Sbjct 7939002 ATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGCACTTT 7938945 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| ||||| ||| Sbjct 7938944 TTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCA 7938885 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | |||| | ||| ||||| ||||| || | | || || |||||||| | || | Sbjct 7938884 TCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGG 7938825 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 72499 | ||||| || ||||| ||||| |||| |||||||||||||||||||| | || | Sbjct 7938824 GTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAA 7938765 Query 72500 TATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 |||| ||| || || | | ||| ||||| ||||||| ||| || || || Sbjct 7938764 GATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128990294920