Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 304 2e-77
seq1207 194 2e-44
>seq1209
Length=14622995
Score = 304 bits (336), Expect = 2e-77
Identities = 527/755 (70%), Gaps = 21/755 (3%)
Strand=Plus/Minus
Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994
||||||||| || ||||| || || || | || | || |||||||| ||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 42050
||||| || | ||||| || || || || || | | ||| | |||||| |
Sbjct 7446673 AACCGCCTCCCTCATAATG--TCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--T 7446618
Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110
||||||| || | ||||| |||||| ||| || || ||||| | || || || ||||
Sbjct 7446617 GTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 7446558
Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170
|| || ||||| || ||||| || |||||||| || |||||||| ||||| |||||||
Sbjct 7446557 TGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATG 7446498
Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230
| ||||||||||| | ||||| || || || || || | || | ||| | || ||
Sbjct 7446497 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGG 7446438
Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287
| | || | |||||| | ||||||||||||| ||||| ||||| |||| ||
Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378
Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGAT 42345
| | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| ||
Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 7446320
Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405
|| |||| |||||||| |||||||||||||| | ||| | || | ||||| |||||
Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260
Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACT 42463
| ||||||| || || ||||| ||||||| |||| || || ||||| || ||
Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202
Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523
|| || ||||||||||||||||| ||||| |||| ||| |||| |||| ||
Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCG-CCATC 7446143
Query 42524 GTTAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582
|||| || ||||||| ||| || || | | ||| ||||| || || ||||||||
Sbjct 7446142 ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083
Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642
|| || | || || || || | | |||||| ||||||||||| || || | | |||
Sbjct 7446082 GGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAAC 7446023
Query 42643 AAATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677
|||||| ||||| || |||| | |||||||
Sbjct 7446022 AAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988
>seq1207
Length=20116479
Score = 194 bits (214), Expect = 2e-44
Identities = 365/535 (68%), Gaps = 4/535 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| || ||||| || ||||| ||||||||||| || | || ||||||| | | |
Sbjct 7939242 ACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCT 7939183
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|||||| || || ||||| | || | ||| || | ||| | ||||||||||
Sbjct 7939182 TCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGT 7939123
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201
|| | || ||||| | | || || || || || || |||||||| | || | |||
Sbjct 7939122 TCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCA 7939063
Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261
|| | || | || | | ||| || | || ||| ||||| | ||||||||||| | |
Sbjct 7939062 GTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCG 7939003
Query 72262 ATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319
|| | | || | || || | || |||| ||||| ||||| || || |||
Sbjct 7939002 ATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGCACTTT 7938945
Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379
| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| ||||| |||
Sbjct 7938944 TTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCA 7938885
Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439
| |||| | ||| ||||| ||||| || | | || || |||||||| | || |
Sbjct 7938884 TCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGG 7938825
Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 72499
| ||||| || ||||| ||||| |||| |||||||||||||||||||| | || |
Sbjct 7938824 GTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAA 7938765
Query 72500 TATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
|||| ||| || || | | ||| ||||| ||||||| ||| || || ||
Sbjct 7938764 GATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671128990294920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |