Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1213 82.4 8e-11 seq1207 82.4 8e-11 >seq1213 Length=7437389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| || || || || |||||||| ||| | |||| |||||| | || Sbjct 1838122 TGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGC 1838181 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || | |||||||| |||||||| || || |||||||||||||| || || Sbjct 1838182 TTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGTATCTTA 1838241 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | || ||| | || || || || | ||| | ||||| || || Sbjct 1838242 GCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTG 1838301 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||| || |||||||| ||||| Sbjct 1838302 AGTGTCTTCACGAATATCTGCAT 1838324 >seq1207 Length=20116479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||||| | | ||| | |||| ||| || || ||||| || ||||| ||| Sbjct 17430738 GCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17430797 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | | || || | ||| |||||||| |||| || ||||||||||| || || Sbjct 17430798 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGG 17430857 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||| || ||||| || |||||| ||| | | || | | || | || || || Sbjct 17430858 TATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 17430917 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||||||||||| || ||||| Sbjct 17430918 CTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006687043440