Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1209 187 4e-42 >seq1209 Length=14622995 Score = 187 bits (206), Expect = 4e-42 Identities = 514/770 (67%), Gaps = 36/770 (5%) Strand=Plus/Plus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| ||||||||||| ||||| | ||||| || ||| |||||||||||||| Sbjct 7446032 CCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 7446091 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || |||||| || | |||||||| |||||||| | | || | ||| Sbjct 7446092 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGA-AGGCCTT--AATGATGGC 7446148 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 || || | || ||||| | ||||||| || ||||| | | ||||| ||||| || Sbjct 7446149 GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAAT 7446208 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || || || |||| || || | | | ||| | ||||| |||| |||| | || Sbjct 7446209 GAAAACCTAACTTTGA-ACTTTTGTAACGA-AGTCCAA-ATTCCCGAGGC-TCGTTGTTT 7446264 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| | ||| || | || ||| | || || |||||||||||| |||||||| Sbjct 7446265 TTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCTCTTCTGATTGA 7446324 Query 125297 CATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 | |||||| ||||| | |||| | | | | |||||||| | | ||| | Sbjct 7446325 TACCTACATTAAGGATCCAGTGGAACGCGA---CTTTTTGTTTAACGCCGTTCAGACGCT 7446381 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGTCT 125411 ||| | | | ||| || || | |||| || ||||||| | | | || ||| | Sbjct 7446382 GCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGA-AAGCCC 7446440 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | ||||| || | || ||||||||||| || || || ||| | |||||||| ||| Sbjct 7446441 -CATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCA 7446499 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| | |||||||||||||||||||| || |||||||| || || || ||| ||| Sbjct 7446500 TTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCTTCAGCAAC 7446559 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTC--TACTGTTTCGCA 125589 ||||| || || || || ||||| ||| || |||| ||| | || | || || Sbjct 7446560 GAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTG-CATGCCTTATTTTTAAACA 7446618 Query 125590 -ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | || | || | |||| || || | || ||||| | | || Sbjct 7446619 TATTGTCAACAAACCTACGGCAG----------CAAGAGTTTAT-GACATTATGAGGGAG 7446667 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || || || || ||| || ||||| || || | |||| |||| | ||||||||| Sbjct 7446668 GCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCTTATTGGCATG 7446727 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || || ||||||||| | |||||| |||||| || ||||| ||||| Sbjct 7446728 AATTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCTACT 7446777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047926636920