Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 187 4e-42
>seq1209
Length=14622995
Score = 187 bits (206), Expect = 4e-42
Identities = 514/770 (67%), Gaps = 36/770 (5%)
Strand=Plus/Plus
Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060
|||||| ||||||||||| ||||| | ||||| || ||| ||||||||||||||
Sbjct 7446032 CCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 7446091
Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120
|| || || |||||| || | |||||||| |||||||| | | || | |||
Sbjct 7446092 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGA-AGGCCTT--AATGATGGC 7446148
Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180
|| || | || ||||| | ||||||| || ||||| | | ||||| ||||| ||
Sbjct 7446149 GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAAT 7446208
Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236
|| || || |||| || || | | | ||| | ||||| |||| |||| | ||
Sbjct 7446209 GAAAACCTAACTTTGA-ACTTTTGTAACGA-AGTCCAA-ATTCCCGAGGC-TCGTTGTTT 7446264
Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296
|||||| | ||| || | || ||| | || || |||||||||||| ||||||||
Sbjct 7446265 TTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCTCTTCTGATTGA 7446324
Query 125297 CATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353
| |||||| ||||| | |||| | | | | |||||||| | | ||| |
Sbjct 7446325 TACCTACATTAAGGATCCAGTGGAACGCGA---CTTTTTGTTTAACGCCGTTCAGACGCT 7446381
Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGTCT 125411
||| | | | ||| || || | |||| || ||||||| | | | || ||| |
Sbjct 7446382 GCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGA-AAGCCC 7446440
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471
| ||||| || | || ||||||||||| || || || ||| | |||||||| |||
Sbjct 7446441 -CATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCA 7446499
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
||||| | |||||||||||||||||||| || |||||||| || || || ||| |||
Sbjct 7446500 TTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCTTCAGCAAC 7446559
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTC--TACTGTTTCGCA 125589
||||| || || || || ||||| ||| || |||| ||| | || | || ||
Sbjct 7446560 GAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTG-CATGCCTTATTTTTAAACA 7446618
Query 125590 -ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648
| | || | || | |||| || || | || ||||| | | ||
Sbjct 7446619 TATTGTCAACAAACCTACGGCAG----------CAAGAGTTTAT-GACATTATGAGGGAG 7446667
Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708
|| || || || ||| || ||||| || || | |||| |||| | |||||||||
Sbjct 7446668 GCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCTTATTGGCATG 7446727
Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758
|| || ||||||||| | |||||| |||||| || ||||| |||||
Sbjct 7446728 AATTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCTACT 7446777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741047926636920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |