Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1207 102 6e-17 seq1213 82.4 6e-11 >seq1207 Length=20116479 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | ||||| ||| | ||||| || || || ||||| || ||||| ||| Sbjct 17430737 TGCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGG 17430796 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | | || |||||||| || |||||| | || | ||||| || || | Sbjct 17430797 ATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCG 17430856 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCT 15313 | || || ||||| || |||||| | |||| || | || |||| ||| || || Sbjct 17430857 GTATACCCTCTTTATCCTGAATTTT-CGCTTTCACGTTCTCGATGGAATCACTTGGCTCA 17430915 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | || || ||||| || || ||||||||||| ||||| ||||| || Sbjct 17430916 ACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968 >seq1213 Length=7437389 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| || | | ||||||| || || Sbjct 1838122 TGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGC 1838181 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| |||||| ||| || || || |||||| ||||||||||| || || Sbjct 1838182 TTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGTATCTTA 1838241 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || ||||||| | || ||| || || || || ||||| || || || || Sbjct 1838242 GCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTG 1838301 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 1838302 AGTGTCTTCACGAATATCTGCAT 1838324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173828090197