Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1207 93.3 3e-14 seq1213 89.7 3e-13 >seq1207 Length=20116479 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 33172 TGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATCC---AATTGCT 33227 ||||||||| ||||| |||||||| || || | | ||| | | |||| ||||||| Sbjct 17430768 TGTCGACTCCTTTTGAATATTGTAGTCGGATA----GGGTTCGCCCATCCTCTAATTGCT 17430823 Query 33228 TTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCT 33287 | ||| || || | |||||||| || | ||||| || ||||| || ||| | Sbjct 17430824 TACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCG 17430883 Query 33288 GTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAA 33347 ||| || | | || | || | || | ||| || || ||||| |||||||| |||| Sbjct 17430884 CTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAA 17430943 Query 33348 GAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||||| ||||| || Sbjct 17430944 GAGTTTTTACGAAAATCTGCATTTT 17430968 >seq1213 Length=7437389 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||| || | ||||||||| || || || ||||| || || | || | ||| || Sbjct 1838115 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1838174 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| |||||||| ||||| | ||| ||||| |||| || ||||||||||| || Sbjct 1838175 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 1838234 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || || ||| |||| ||| | || | ||| |||| ||| || || Sbjct 1838235 TATCTTAGCC---TTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 1838291 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || || ||||| || |||||| Sbjct 1838292 CTTTCCAGTGAGTGTCTTCACGAATATCTGCATG 1838325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318772871830866