Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 93.3 3e-14
seq1213 89.7 3e-13
>seq1207
Length=20116479
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 8/205 (4%)
Strand=Plus/Plus
Query 33172 TGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATCC---AATTGCT 33227
||||||||| ||||| |||||||| || || | | ||| | | |||| |||||||
Sbjct 17430768 TGTCGACTCCTTTTGAATATTGTAGTCGGATA----GGGTTCGCCCATCCTCTAATTGCT 17430823
Query 33228 TTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCT 33287
| ||| || || | |||||||| || | ||||| || ||||| || ||| |
Sbjct 17430824 TACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCG 17430883
Query 33288 GTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAA 33347
||| || | | || | || | || | ||| || || ||||| |||||||| ||||
Sbjct 17430884 CTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAA 17430943
Query 33348 GAGTTTTTACGAAAATTTGCATGTT 33372
|||||||||||||||| ||||| ||
Sbjct 17430944 GAGTTTTTACGAAAATCTGCATTTT 17430968
>seq1213
Length=7437389
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/214 (70%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||||| || | ||||||||| || || || ||||| || || | || | ||| ||
Sbjct 1838115 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1838174
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||| |||||||| ||||| | ||| ||||| |||| || ||||||||||| ||
Sbjct 1838175 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 1838234
Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
||| ||| || || ||| |||| ||| | || | ||| |||| ||| || ||
Sbjct 1838235 TATCTTAGCC---TTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 1838291
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
||||| || || || || ||||| || ||||||
Sbjct 1838292 CTTTCCAGTGAGTGTCTTCACGAATATCTGCATG 1838325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318772871830866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |