Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 150 2e-31
>seq1209
Length=14622995
Score = 150 bits (166), Expect = 2e-31
Identities = 407/618 (66%), Gaps = 20/618 (3%)
Strand=Plus/Minus
Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194
||| ||||| || | ||||||||||| ||| | |||||||| | || || | |||
Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560
Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254
||| || || || || ||||| || || || || || | |||||| |||| ||||||
Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500
Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314
||||| ||||| || | |||||||| || || || || | | || ||| | || |
Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440
Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374
|| || | | |||||| | ||||| | ||||| | ||| || ||
Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380
Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCT 13432
| | | |||||||| ||| | | |||| |||| || ||| || |||||
Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCA 7446322
Query 13433 ATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491
||| | ||| | |||||||| |||||||| ||||| | || | ||| | || |||||
Sbjct 7446321 ATC-AGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAA 7446263
Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551
||| | |||||| | | || |||||| |||| | | || |||||| |||||
Sbjct 7446262 ACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAAC 7446203
Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611
|| || ||||| || ||||||||||| | | | ||| | || | ||||
Sbjct 7446202 GATGCCATCACTGGCTGCAAAAAAAGCCAAAA----CATAAGATATGAAATGACGTT--- 7446150
Query 13612 TGACAACTTTAA-------CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGG 13664
| || | |||| |||||| | | || || | ||||| || |||||||| |
Sbjct 7446149 CGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTG 7446090
Query 13665 TCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAA 13724
||||||| || |||||||| ||||| || | | ||| || || | ||| ||||| |
Sbjct 7446089 TCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCA 7446030
Query 13725 ACACAACGTATCTTCCAG 13742
|||||| |||||| ||
Sbjct 7446029 TCACAACAAATCTTCGAG 7446012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430976007588234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |