Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1209 150 2e-31 >seq1209 Length=14622995 Score = 150 bits (166), Expect = 2e-31 Identities = 407/618 (66%), Gaps = 20/618 (3%) Strand=Plus/Minus Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||| ||||| || | ||||||||||| ||| | |||||||| | || || | ||| Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| || || || || ||||| || || || || || | |||||| |||| |||||| Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| ||||| || | |||||||| || || || || | | || ||| | || | Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || || | | |||||| | ||||| | ||||| | ||| || || Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCT 13432 | | | |||||||| ||| | | |||| |||| || ||| || ||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCA 7446322 Query 13433 ATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 ||| | ||| | |||||||| |||||||| ||||| | || | ||| | || ||||| Sbjct 7446321 ATC-AGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAA 7446263 Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 ||| | |||||| | | || |||||| |||| | | || |||||| ||||| Sbjct 7446262 ACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAAC 7446203 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 || || ||||| || ||||||||||| | | | ||| | || | |||| Sbjct 7446202 GATGCCATCACTGGCTGCAAAAAAAGCCAAAA----CATAAGATATGAAATGACGTT--- 7446150 Query 13612 TGACAACTTTAA-------CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGG 13664 | || | |||| |||||| | | || || | ||||| || |||||||| | Sbjct 7446149 CGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTG 7446090 Query 13665 TCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAA 13724 ||||||| || |||||||| ||||| || | | ||| || || | ||| ||||| | Sbjct 7446089 TCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCA 7446030 Query 13725 ACACAACGTATCTTCCAG 13742 |||||| |||||| || Sbjct 7446029 TCACAACAAATCTTCGAG 7446012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430976007588234