Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1209 192 1e-43 seq1207 181 2e-40 seq1213 145 2e-29 >seq1209 Length=14622995 Score = 192 bits (212), Expect = 1e-43 Identities = 485/724 (67%), Gaps = 20/724 (3%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | | || || || || ||| || ||| | | ||||| | || ||| Sbjct 7446017 AGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTT 7446076 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 || || |||||||| || || ||||| ||| || | | ||| | | |||||| || Sbjct 7446077 GCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGC 7446136 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 | || | ||| | || ||||||||| || | || |||||||||| |||||| Sbjct 7446137 CTTAATGATGGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGAT 7446196 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || |||||||| ||||| ||| ||| || ||| | || || || ||||| || || Sbjct 7446197 GGCATCGTTAATGAAAACCTAACTTTGAACTTTTGTAACGAAGTCCAAATTCCCGAGGCT 7446256 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | ||||||||||| | || | || | ||||| |||||||| || |||||| ||| Sbjct 7446257 CGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCTCTT 7446316 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT-----CTA 269054 | || ||||| || || | ||| || | || | |||| ||| || | Sbjct 7446317 CTGATTGATACCTACATTAAGGAT-CCAGTGGAACG---CGACTTTTTGTTTAACGCCGT 7446372 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACG 269111 | || || || ||||| || ||| | || |||||||| | ||||| ||| Sbjct 7446373 TCAG-ACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATA 7446431 Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | || || |||| || || |||| || || || ||||| ||||| | ||||||| Sbjct 7446432 GGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTT 7446491 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || || ||||| ||||||||||| | ||||| | || || |||||||| | || | Sbjct 7446492 CTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCACCT 7446551 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG-TTTATTA 269290 || ||||| ||||| ||| |||| ||||| | ||| ||| || || || ||||| Sbjct 7446552 TCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTGCATGCCTTATT- 7446610 Query 269291 TTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350 |||| | ||| | ||| |||||||| | || ||||| || || ||||| || | Sbjct 7446611 TTTA-AACATAT-TGTCA-ACAAACCTACGGCAGCAAGAGTTTATGACATTAT-GAGGGA 7446666 Query 269351 -GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTAT 269409 || ||| | ||| |||||||| || || || || || || ||||||| || || Sbjct 7446667 GGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCTTATTGGCAT 7446726 Query 269410 GAAT 269413 |||| Sbjct 7446727 GAAT 7446730 >seq1207 Length=20116479 Score = 181 bits (200), Expect = 2e-40 Identities = 183/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 || || || |||| ||| || || || || || | ||| || || || |||||||| ||| Sbjct 17430733 TTCATGCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAG 17430792 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || ||||| |||| || || |||| ||| || ||||| || || || | || ||||| Sbjct 17430793 TCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCT 17430852 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || ||||| || |||||||||||||| || ||||| || || || | || ||| || || Sbjct 17430853 GGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGC 17430912 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| ||||| ||||| || |||||||| |||||||| || ||||||||||||| Sbjct 17430913 TCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTTGT 17430970 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| |||||||||| | | || || Sbjct 13120232 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATC 13120291 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || ||||||||||| || | ||| ||||| || || || || || || || Sbjct 13120292 CTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTC 13120351 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || |||||||| || | | ||| ||| || ||||| || || ||||| Sbjct 13120352 TTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGT 13120411 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| ||||| || || |||||||| Sbjct 13120412 TTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 >seq1213 Length=7437389 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| || || |||||||| || ||||| || || || | ||||| Sbjct 1838112 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1838171 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || || | ||| ||||| || || || |||||||| || Sbjct 1838172 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 1838231 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || || ||||||| | || ||||| || ||||| | |||||||| Sbjct 1838232 TTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 1838291 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| ||||| || || ||||||||||| Sbjct 1838292 CTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| || || ||||||||||| ||||| || || || | ||||| Sbjct 1844330 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTC 1844271 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || || | ||| ||||| || || || || || || || Sbjct 1844270 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1844211 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | | || || || || ||||| ||||| || || Sbjct 1844210 CTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGT 1844151 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||| || || ||||| |||||||| Sbjct 1844150 CTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| || || |||||||| || ||||| || || || | ||||| Sbjct 1844558 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1844499 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || || | ||| ||||| || || || || || || || Sbjct 1844498 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1844439 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| ||||| ||||| || | | || || || || ||||| ||||| || || Sbjct 1844438 CTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGT 1844379 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||||||||| || ||||| || ||||| Sbjct 1844378 CTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||| || ||||| || || || | ||||| Sbjct 1837884 AAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1837943 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || || | ||| ||||| || || || || || || || Sbjct 1837944 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1838003 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | | || || || || ||||| ||||| || || Sbjct 1838004 CTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGT 1838063 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||||||||| || ||||| || ||||| Sbjct 1838064 CTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | |||||| Sbjct 1844785 AGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1844726 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || ||||| || || || || | ||| ||||| || || || || || || ||| Sbjct 1844725 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844666 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | | || || || || ||||| ||||| || ||| Sbjct 1844665 TGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTC 1844606 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| || ||||| || ||||| Sbjct 1844605 TTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380446460636