Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 96.9 3e-15
seq1213 86.0 5e-12
>seq1207
Length=20116479
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| ||||| ||||| |||| || ||| | ||||||| ||||
Sbjct 13120242 TGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGC 13120301
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | |||| | |||||||||||| || | || |||||||| ||| ||
Sbjct 13120302 TTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTA 13120361
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | | || | ||| | || ||| ||| | ||||| ||||| || ||
Sbjct 13120362 GCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTTGCCAGTA 13120421
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
||||||||||| |||||||||||
Sbjct 13120422 AGAGTTTTCACGAAAATCTGCAT 13120444
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | |||| || | |||||||| |||||||||||| ||||| || |
Sbjct 17430739 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17430798
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| |||| | ||||| | |||||||| || | || | || |||||||| |||
Sbjct 17430799 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGT 17430858
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| || || || ||| ||||||| || | | | |||| ||| | | ||| |
Sbjct 17430859 ATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACC 17430918
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | |||||| ||||| || || |||||||| || |||||||||||
Sbjct 17430919 TCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965
>seq1213
Length=7437389
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|||||||| |||||| ||||| ||||| || | || || || |||| |||| |||
Sbjct 1844320 TGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA-AAGGGTGCGGCCGTCTTCCAACTG 1844262
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || | || | ||||||||||||| || | | ||||||||| || ||
Sbjct 1844261 CTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTT 1844202
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
| ||| | | | | || | || | | |||| ||| | ||| ||||| || || ||
Sbjct 1844201 CGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGT 1844142
Query 48703 GAGAGTTTTCACAAAAATCTGCATCG 48728
|| || |||||||| ||||||||||
Sbjct 1844141 AAGCGTCTTCACAAAGATCTGCATCG 1844116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421244951923217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |