Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1207 105 6e-18 seq1213 82.4 7e-11 >seq1207 Length=20116479 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||| || || |||| || | | ||||||||||| |||||||| || || Sbjct 13120289 ATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTT 13120348 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || |||| | ||||| |||| || || Sbjct 13120349 GTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTAT 13120408 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||||||| || |||||||||| Sbjct 13120409 AGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATGC 13120446 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || |||||||| | || || ||| |||| ||| | |||||| | || || | Sbjct 17430769 GTCGACTCCTTTTGAATATTGTAGTCGG--ATAGGGTTCGCCCATCCTCTAATTGCTTAC 17430826 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | | |||||||||||| || ||||| ||||| || | |||||| || | Sbjct 17430827 CAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTT 17430886 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | ||| ||| | ||| | ||| || || |||| || || ||||||||||||||| Sbjct 17430887 TCACGTTCTCGATGGAATCA-CTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGA 17430945 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| || || |||||||| Sbjct 17430946 GTTTTTACGAAAATCTGCAT 17430965 >seq1213 Length=7437389 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| || ||||| || | ||| || ||| | ||| | || || Sbjct 1837887 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1837946 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| | || || | | |||||||| || ||||| || || ||||| | Sbjct 1837947 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1838006 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | | | |||| | || || |||| |||||||| || Sbjct 1838007 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1838066 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || ||||||||||| ||||| Sbjct 1838067 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | |||| ||| || ||||| || | ||| || ||| | ||| | Sbjct 1844788 CGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCG 1844729 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| ||||| | || || | | |||||||| || ||||| || || ||| Sbjct 1844728 TCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTG 1844669 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | | |||| | || || |||| |||||| Sbjct 1844668 TCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATG 1844609 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||||||| || ||||||||||| ||||| Sbjct 1844608 GTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284380370120