Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 105 6e-18
seq1213 82.4 7e-11
>seq1207
Length=20116479
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||| ||| || || |||| || | | ||||||||||| |||||||| || ||
Sbjct 13120289 ATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTT 13120348
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||| || ||||| || | | || |||| | ||||| |||| || ||
Sbjct 13120349 GTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTAT 13120408
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| ||||||||||||||||| || ||||||||||
Sbjct 13120409 AGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATGC 13120446
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/200 (72%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| || |||||||| | || || ||| |||| ||| | |||||| | || || |
Sbjct 17430769 GTCGACTCCTTTTGAATATTGTAGTCGG--ATAGGGTTCGCCCATCCTCTAATTGCTTAC 17430826
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| | ||||| | | |||||||||||| || ||||| ||||| || | |||||| || |
Sbjct 17430827 CAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTT 17430886
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
| ||| ||| | ||| | ||| || || |||| || || |||||||||||||||
Sbjct 17430887 TCACGTTCTCGATGGAATCA-CTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGA 17430945
Query 94988 GTTTTCACAAAGATCTGCAT 95007
||||| || || ||||||||
Sbjct 17430946 GTTTTTACGAAAATCTGCAT 17430965
>seq1213
Length=7437389
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | ||| || ||||| || | ||| || ||| | ||| | || ||
Sbjct 1837887 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1837946
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| ||||| | || || | | |||||||| || ||||| || || ||||| |
Sbjct 1837947 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1838006
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | | |||| | || || |||| |||||||| ||
Sbjct 1838007 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1838066
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||| || ||||||||||| |||||
Sbjct 1838067 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||| | |||| ||| || ||||| || | ||| || ||| | ||| |
Sbjct 1844788 CGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCG 1844729
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| ||| ||||| | || || | | |||||||| || ||||| || || |||
Sbjct 1844728 TCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTG 1844669
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || | | | |||| | || || |||| ||||||
Sbjct 1844668 TCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATG 1844609
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||||||| || ||||||||||| |||||
Sbjct 1844608 GTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448284380370120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |