Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1210 165 1e-36 seq1216 132 8e-27 seq1215 131 3e-26 >seq1210 Length=13762452 Score = 165 bits (182), Expect = 1e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||| ||||||||||| || ||||| || |||||||| || || ||||| || Sbjct 9545890 TCTTCGCGATAATATCCAAGGAATAACTAAGCCTGCCATCCGTCGCCTTGCACGTCGCGG 9545949 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| |||| || | |||| || |||| || | || |||| |||| Sbjct 9545950 TGGCGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACACGCGGCGTACTGAAAGTCTT 9546009 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | |||||| | ||| ||| || |||||||||||||||||||| ||||| || Sbjct 9546010 CTTGGAAAGCGTTATACGTGACGCTGTCACTTATACCGAGCACGCTAAACGCAAGACCGT 9546069 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || |||||||| |||| | | ||||| || || Sbjct 9546070 CACAGCCATGGACGTAGTTTACGCGCTAAAGCGTCAAGGGCGTACGCTATATGGCTTCGG 9546129 Query 16693 AAGTTA 16698 |||| Sbjct 9546130 TGGTTA 9546135 >seq1216 Length=2924275 Score = 132 bits (146), Expect = 8e-27 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||| |||||||| ||||| || || |||||||| Sbjct 1367845 CGTGACAACATCCAAGGCATTACAAAGCCTGCTATCCGACGTCTAGCACGCCGTGGTGGC 1367786 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| || |||| || |||| ||| ||| | ||||||||||| Sbjct 1367785 GTAAAACGCATCTCTGGGCTGATCTACGAGGAGACTCGCATTGTGCTCAAGATCTTCCTG 1367726 Query 16577 AAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| ||| || | || || || || || |||||||| || | || ||||| ||||| Sbjct 1367725 GAGAGCGTCATTCGCGACGCAGTTGCA-TACACCGAGCATGCGAGGCGCAAGACCGTCAC 1367667 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||| | ||||| || | ||||| || || |||| || || ||||| || Sbjct 1367666 TGCCTTGGACGTGGTCTACGCTCTCAAACGCCACGGTCGTACCATCTACGGTTTCGG 1367610 Score = 120 bits (132), Expect = 5e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| ||||| || ||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 746198 CGTGATAATATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 746139 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || |||| || | |||| || |||| |||| || | ||| | ||||| Sbjct 746138 GTAAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 746079 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | || ||| || || || |||||||| || || ||||| || || Sbjct 746078 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 746019 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | |||||||| | ||||| || || |||| | || || ||||| Sbjct 746018 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 745963 Score = 120 bits (132), Expect = 5e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| ||||| || ||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 747978 CGTGATAATATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 748037 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || |||| || | |||| || |||| |||| || | ||| | ||||| Sbjct 748038 GTAAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 748097 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | || ||| || || || |||||||| || || ||||| || || Sbjct 748098 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 748157 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | |||||||| | ||||| || || |||| | || || ||||| Sbjct 748158 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 748213 >seq1215 Length=4267853 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| ||||| || ||||| |||||||| || || ||||| Sbjct 904019 CGTGACAACATCCAGGGCATCACGAAGCCCGCCATCCGACGTCTGGCACGCCGAGGTGGC 903960 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | || ||||||| Sbjct 903959 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGAGGTGTGCTCAAAGTCTTCCTG 903900 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || || || || |||||||| || || ||||||||||| Sbjct 903899 GAGAACGTCATCCGTGACGCCGTCACGTACACTGAGCACGCGAAGCGCAAGACTGTCACT 903840 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | || ||||| | || || || || |||| | || || ||||| || Sbjct 903839 GCCATGGACGTGGTGTATGCTCTTAAGCGCCAGGGTCGTACCCTCTACGGCTTTGGCGGT 903780 Query 16697 TA 16698 || Sbjct 903779 TA 903778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074087288381