Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1210 165 1e-36
seq1216 132 8e-27
seq1215 131 3e-26
>seq1210
Length=13762452
Score = 165 bits (182), Expect = 1e-36
Identities = 184/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| ||||| ||||||||||| || ||||| || |||||||| || || ||||| ||
Sbjct 9545890 TCTTCGCGATAATATCCAAGGAATAACTAAGCCTGCCATCCGTCGCCTTGCACGTCGCGG 9545949
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || |||||| |||| || | |||| || |||| || | || |||| ||||
Sbjct 9545950 TGGCGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACACGCGGCGTACTGAAAGTCTT 9546009
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | | | |||||| | ||| ||| || |||||||||||||||||||| ||||| ||
Sbjct 9546010 CTTGGAAAGCGTTATACGTGACGCTGTCACTTATACCGAGCACGCTAAACGCAAGACCGT 9546069
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| ||||||| | || || || | || |||||||| |||| | | ||||| || ||
Sbjct 9546070 CACAGCCATGGACGTAGTTTACGCGCTAAAGCGTCAAGGGCGTACGCTATATGGCTTCGG 9546129
Query 16693 AAGTTA 16698
||||
Sbjct 9546130 TGGTTA 9546135
>seq1216
Length=2924275
Score = 132 bits (146), Expect = 8e-27
Identities = 173/237 (73%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || ||||||||||| || || ||||| |||||||| ||||| || || ||||||||
Sbjct 1367845 CGTGACAACATCCAAGGCATTACAAAGCCTGCTATCCGACGTCTAGCACGCCGTGGTGGC 1367786
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || ||||||| || |||| || |||| ||| ||| | |||||||||||
Sbjct 1367785 GTAAAACGCATCTCTGGGCTGATCTACGAGGAGACTCGCATTGTGCTCAAGATCTTCCTG 1367726
Query 16577 AAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635
||| ||| || | || || || || || |||||||| || | || ||||| |||||
Sbjct 1367725 GAGAGCGTCATTCGCGACGCAGTTGCA-TACACCGAGCATGCGAGGCGCAAGACCGTCAC 1367667
Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||| | ||||| || | ||||| || || |||| || || ||||| ||
Sbjct 1367666 TGCCTTGGACGTGGTCTACGCTCTCAAACGCCACGGTCGTACCATCTACGGTTTCGG 1367610
Score = 120 bits (132), Expect = 5e-23
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||| ||||| || ||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 746198 CGTGATAATATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 746139
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || |||| || | |||| || |||| |||| || | ||| | |||||
Sbjct 746138 GTAAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 746079
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| || || | || ||| || || || |||||||| || || ||||| || ||
Sbjct 746078 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 746019
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||| | |||||||| | ||||| || || |||| | || || |||||
Sbjct 746018 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 745963
Score = 120 bits (132), Expect = 5e-23
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||| ||||| || ||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 747978 CGTGATAATATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 748037
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || |||| || | |||| || |||| |||| || | ||| | |||||
Sbjct 748038 GTAAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 748097
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| || || | || ||| || || || |||||||| || || ||||| || ||
Sbjct 748098 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 748157
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||| | |||||||| | ||||| || || |||| | || || |||||
Sbjct 748158 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 748213
>seq1215
Length=4267853
Score = 131 bits (144), Expect = 3e-26
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||| ||||| || ||||| |||||||| || || |||||
Sbjct 904019 CGTGACAACATCCAGGGCATCACGAAGCCCGCCATCCGACGTCTGGCACGCCGAGGTGGC 903960
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || ||||||| | |||| || |||| || | ||| | || |||||||
Sbjct 903959 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGAGGTGTGCTCAAAGTCTTCCTG 903900
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| || || || || |||||||| || || |||||||||||
Sbjct 903899 GAGAACGTCATCCGTGACGCCGTCACGTACACTGAGCACGCGAAGCGCAAGACTGTCACT 903840
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
||||||| | || ||||| | || || || || |||| | || || ||||| ||
Sbjct 903839 GCCATGGACGTGGTGTATGCTCTTAAGCGCCAGGGTCGTACCCTCTACGGCTTTGGCGGT 903780
Query 16697 TA 16698
||
Sbjct 903779 TA 903778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074087288381
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |