Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1209 129 6e-25 >seq1209 Length=14622995 Score = 129 bits (142), Expect = 6e-25 Identities = 385/593 (65%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 |||||| |||||||| || | ||||||||||| || | |||||||||| || | Sbjct 7446624 ACAATA--TGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGA 7446567 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | || || || || || | || ||||| | || | ||| || | |||||| || | Sbjct 7446566 TCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAG 7446507 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | ||||||| || |||||||||| ||| ||||| ||||| ||||| |||| || ||| Sbjct 7446506 AAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAG 7446447 Query 21633 CGTATGTAGATT--CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTT--A 21688 |||||| | || || | | |||| ||| | ||||| | || |||||| | Sbjct 7446446 CGTATGGGGCTTTCCTATTTGCAAT--CCACCTAAGAGCCCAATCGGC--TTTCTTAGCA 7446391 Query 21689 ATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATG 21748 | ||| | || | || || || || | | | ||| || ||| | ||| Sbjct 7446390 ACACATGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATG 7446331 Query 21749 NNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAAT 21808 | |||||||| ||||| || ||||| | || | || | Sbjct 7446330 TAGGTATCAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATC 7446271 Query 21809 CCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGA--GCCAAGT 21866 ||||||||||| | ||||| | | ||| || ||| | |||| ||| | | | || Sbjct 7446270 CCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGT 7446213 Query 21867 TTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 ||||||| || || ||||||||||| |||||||| ||||| | || ||| |||| | Sbjct 7446212 TTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGAC 7446153 Query 21927 GTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAG 21986 ||||| ||| | | || |||||| | || || | ||||| ||||| ||| Sbjct 7446152 GTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAA 7446093 Query 21987 TTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATAT 22039 |||||||||| |||| ||| || || || | |||||| |||| |||| Sbjct 7446092 CTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATAT 7446040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531892708459080