Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1209 309 4e-79 seq1207 167 3e-36 >seq1209 Length=14622995 Score = 309 bits (342), Expect = 4e-79 Identities = 526/754 (70%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| || || || | || | || |||||||| ||||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 33291 ||||| || | ||||| ||| || || | | ||| | || ||||| ||| Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--TGT 7446616 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||| || | ||||| |||||| ||| || || || || | || || | |||||| Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || ||||| || ||||| || |||||||| || |||||||| || ||||| ||||| Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||||||||||| | ||||| || ||||| || || | || | ||| | || || | Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGGGG 7446438 Query 33472 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || | | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378 Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 33584 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 7446320 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 || |||| |||||||| |||||||||||||| | ||| | || | ||||| ||||| Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACT 33702 | |||||||| ||| || ||||| ||||||| |||| | | |||||||| || Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || ||||||||||||||||| ||||| |||| ||| |||| |||| | Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882 || || | || || || || | | ||||||||||| ||||||||| || | | |||| Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACA 7446022 Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCCA 33916 ||||| ||||| || |||| | ||||||| Sbjct 7446021 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 >seq1207 Length=20116479 Score = 167 bits (184), Expect = 3e-36 Identities = 363/540 (67%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 63212 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63270 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188 Query 63271 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128 Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63390 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068 Query 63391 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63450 ||| || | || | || | | ||| || | || |||||| || |||||||| | Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008 Query 63451 CGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63508 | | ||| | | || | || ||| | | |||| ||||| ||||| || || Sbjct 7939007 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGC 7938950 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 |||| ||||| | ||| ||| |||| | ||| ||||| || ||||| || || ||||| Sbjct 7938949 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATC 7938890 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 |||| |||| | ||| ||||| ||||| || | | || || |||||||| | Sbjct 7938889 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAG 7938830 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 || || ||||| || ||||| ||||| || | |||||||||||||||||||| | Sbjct 7938829 AGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGC 7938770 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 7938769 ATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937723415720