Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 309 4e-79
seq1207 167 3e-36
>seq1209
Length=14622995
Score = 309 bits (342), Expect = 4e-79
Identities = 526/754 (70%), Gaps = 19/754 (3%)
Strand=Plus/Minus
Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233
||||||||| || ||||| || || || | || | || |||||||| |||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 33291
||||| || | ||||| ||| || || | | ||| | || ||||| |||
Sbjct 7446673 AACCGCCTCCCTCATAATGTCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--TGT 7446616
Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351
||||| || | ||||| |||||| ||| || || || || | || || | ||||||
Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556
Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411
|| ||||| || ||||| || |||||||| || |||||||| || ||||| |||||
Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496
Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471
||||||||||| | ||||| || ||||| || || | || | ||| | || || |
Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGGGG 7446438
Query 33472 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526
|| || | | |||||| | ||||||||||||| ||||| ||||| |||| ||
Sbjct 7446437 CTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 7446378
Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 33584
| | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| ||
Sbjct 7446377 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 7446320
Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644
|| |||| |||||||| |||||||||||||| | ||| | || | ||||| |||||
Sbjct 7446319 CAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 7446260
Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACT 33702
| |||||||| ||| || ||||| ||||||| |||| | | |||||||| ||
Sbjct 7446259 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACG 7446202
Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762
|| || ||||||||||||||||| ||||| |||| ||| |||| |||| |
Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 7446142
Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822
| || | ||||||| ||| || || | | ||| ||||| || |||||||||||
Sbjct 7446141 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 7446082
Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882
|| || | || || || || | | ||||||||||| ||||||||| || | | ||||
Sbjct 7446081 GAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACA 7446022
Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCCA 33916
||||| ||||| || |||| | |||||||
Sbjct 7446021 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988
>seq1207
Length=20116479
Score = 167 bits (184), Expect = 3e-36
Identities = 363/540 (67%), Gaps = 5/540 (1%)
Strand=Plus/Minus
Query 63212 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63270
||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | |
Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188
Query 63271 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330
| ||||||| || || ||||| | || | ||| || | ||| | |||||
Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128
Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63390
||||||| | || ||||| | | || || || || || || |||||||| | || |
Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068
Query 63391 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63450
||| || | || | || | | ||| || | || |||||| || |||||||| |
Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008
Query 63451 CGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63508
| | ||| | | || | || ||| | | |||| ||||| ||||| || ||
Sbjct 7939007 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGC 7938950
Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568
|||| ||||| | ||| ||| |||| | ||| ||||| || ||||| || || |||||
Sbjct 7938949 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATC 7938890
Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628
|||| |||| | ||| ||||| ||||| || | | || || |||||||| |
Sbjct 7938889 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAG 7938830
Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688
|| || ||||| || ||||| ||||| || | |||||||||||||||||||| |
Sbjct 7938829 AGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGC 7938770
Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
|| | |||| ||| || || | | ||| ||||| ||||| | ||| || || ||
Sbjct 7938769 ATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622937723415720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |