Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 100 3e-16
seq1207 100 3e-16
seq1211 96.9 3e-15
>seq1213
Length=7437389
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | || | ||||||||||| ||||||||||| |||
Sbjct 1838098 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1838157
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || | |||||| || ||| | || | ||||||||| ||||| ||
Sbjct 1838158 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1838217
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||||||||| || || ||| | | || | | || | | ||| |
Sbjct 1838218 ATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACC 1838277
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237
|| | |||| || || || || || || || ||||| |||||||||||
Sbjct 1838278 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCATGAC 1838327
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||||||||| | ||| | ||||||||||| || |||||||| |||
Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || | |||||| || ||| | || | ||||||||| ||||| ||
Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||| | | ||| | | || | | ||| |
Sbjct 1844680 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844621
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || || || || |||||
Sbjct 1844620 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | || | ||||||||||| ||||| ||||| |||
Sbjct 1844344 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAA 1844285
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || | |||||| || ||| | || | ||||||||| ||||| ||
Sbjct 1844284 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844225
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||| | | ||| | | || | | ||| |
Sbjct 1844224 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844165
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || || || ||||||||
Sbjct 1844164 TCAAGTGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 89.7 bits (98), Expect = 5e-13
Identities = 110/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | || | ||||||||||| ||||||||||| |||
Sbjct 1844572 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1844513
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || | |||||| || ||| | || | ||||||||| ||||| ||
Sbjct 1844512 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844453
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
|| || || ||||| ||| ||| ||||
Sbjct 1844452 ATGCCCTCCTTGTCCTGGATCTTC-GCTT 1844425
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| || ||||| | || | ||||||||||| ||||||||||| |||
Sbjct 1837870 CCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1837929
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || | |||||| || ||| | || | ||||||||| ||||| ||
Sbjct 1837930 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1837989
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||| | | ||| | | || | | ||| |
Sbjct 1837990 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1838049
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || || || || |||||
Sbjct 1838050 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
>seq1207
Length=20116479
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | || | ||| |||||||| ||||| ||||| ||
Sbjct 13120218 CCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGAT 13120277
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || ||| ||||| | ||||||||| || | || | ||||||||| || || ||
Sbjct 13120278 AAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 13120337
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||| | | ||| | || ||| | | |||||
Sbjct 13120338 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACC 13120397
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | || | ||||| || || |||||||| |||||||||||||||
Sbjct 13120398 TCAAGAGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATG 13120445
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
||||||||||||||||| ||||| ||| | ||| ||| ||||||| ||||| ||
Sbjct 17430769 GTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCA 17430828
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| |||| | || ||||| || || || || || ||||| || |||||| ||
Sbjct 17430829 GCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTC 17430888
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||| | | ||| | | ||| | || | || | ||||| || || ||||||
Sbjct 17430889 ACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTT 17430948
Query 131218 TTTACGAAAATCTGCAT 131234
|||||||||||||||||
Sbjct 17430949 TTTACGAAAATCTGCAT 17430965
>seq1211
Length=11859842
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 51810 GTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCAAG 51869
||| || || || || || |||||||| || | | || || || |||| |||||| |
Sbjct 7148539 GTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGCCGTG 7148480
Query 51870 GGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGCAC 51929
|||||||||||| | ||||| || ||||| || || | ||||| ||||| || || ||
Sbjct 7148479 GGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATGAAC 7148420
Query 51930 GTGAAAGCCGTGC 51942
|||||||||||||
Sbjct 7148419 GTGAAAGCCGTGC 7148407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472005619505280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |