Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 309 4e-79
seq1207 190 3e-43
>seq1209
Length=14622995
Score = 309 bits (342), Expect = 4e-79
Identities = 510/727 (70%), Gaps = 23/727 (3%)
Strand=Plus/Minus
Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590
||||||||| || ||||| || || || | || | || |||||||| ||||||
Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674
Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 32646
||||| || | ||||| || || || || || | | ||| | |||||| |
Sbjct 7446673 AACCGCCTCCCTCATAATG--TCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--T 7446618
Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706
||||||| || | ||||| |||||| ||| || || || || | || || || ||||
Sbjct 7446617 GTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 7446558
Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766
|| || ||||| || ||||| || |||||||| || |||||||| || || |||||||
Sbjct 7446557 TGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATG 7446498
Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826
| ||||||||||||| ||||| || || || || || | || | ||| | || ||
Sbjct 7446497 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGG 7446440
Query 32827 CGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881
||| || | | |||||| | ||||||||||||| ||||| ||||| ||||
Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380
Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 32939
|||| | || ||||| | | ||| ||| ||| ||| |||| || ||||||
Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCA 7446322
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|||| |||| |||||||| |||||||||||||| | ||| | ||| | ||||| ||
Sbjct 7446321 ATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 7446262
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCA 33057
|| | |||||||| ||| || ||||| ||||||| |||| | || |||||||| |
Sbjct 7446261 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAA 7446204
Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117
| || || ||||||||||||||||| ||||| |||| ||| |||| |||| |
Sbjct 7446203 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCAT 7446144
Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177
| || | ||||||| ||| || || | | ||| ||||| || ||||||||||
Sbjct 7446143 CATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAA 7446084
Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237
| || || | || || || || | | |||||||||||||||||| || || | | ||
Sbjct 7446083 AGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAA 7446024
Query 33238 CAAATCT 33244
|||||||
Sbjct 7446023 CAAATCT 7446017
>seq1207
Length=20116479
Score = 190 bits (210), Expect = 3e-43
Identities = 368/540 (68%), Gaps = 5/540 (1%)
Strand=Plus/Minus
Query 63067 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63125
||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | |
Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188
Query 63126 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185
| ||||||| || || ||||| | || | ||| || | ||| | |||||
Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128
Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63245
||||||| | || ||||| | | || || || || || || |||||||| | || |
Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068
Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 63305
||| || | || | || | | ||| || | || ||| ||||| ||||||||||
Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008
Query 63306 CTGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63363
| | ||| | | || | || ||| | | |||| ||||| ||||| || ||
Sbjct 7939007 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGC 7938950
Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423
|||| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| |||||
Sbjct 7938949 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATC 7938890
Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483
|||| |||| | ||| ||||| ||||| || | | || || |||||||| |
Sbjct 7938889 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAG 7938830
Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543
|| || ||||| ||| ||||| ||||| || | |||||||||||||||||||| |
Sbjct 7938829 AGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGC 7938770
Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
|| | |||| ||| || || | | ||| ||||| ||||| | ||| || || ||
Sbjct 7938769 ATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633622360873200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |