Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1209 309 4e-79 seq1207 190 3e-43 >seq1209 Length=14622995 Score = 309 bits (342), Expect = 4e-79 Identities = 510/727 (70%), Gaps = 23/727 (3%) Strand=Plus/Minus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 32646 ||||| || | ||||| || || || || || | | ||| | |||||| | Sbjct 7446673 AACCGCCTCCCTCATAATG--TCATAAACTCTTGCTGCCGTAGGTTTGTTGACAATA--T 7446618 Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 ||||||| || | ||||| |||||| ||| || || || || | || || || |||| Sbjct 7446617 GTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 7446558 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 || || ||||| || ||||| || |||||||| || |||||||| || || ||||||| Sbjct 7446557 TGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATG 7446498 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826 | ||||||||||||| ||||| || || || || || | || | ||| | || || Sbjct 7446497 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA--TGG 7446440 Query 32827 CGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 ||| || | | |||||| | ||||||||||||| ||||| ||||| |||| Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 32939 |||| | || ||||| | | ||| ||| ||| ||| |||| || |||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCA 7446322 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||||| || Sbjct 7446321 ATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 7446262 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCA 33057 || | |||||||| ||| || ||||| ||||||| |||| | || |||||||| | Sbjct 7446261 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAA 7446204 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 | || || ||||||||||||||||| ||||| |||| ||| |||| |||| | Sbjct 7446203 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCAT 7446144 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 | || | ||||||| ||| || || | | ||| ||||| || |||||||||| Sbjct 7446143 CATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAA 7446084 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 | || || | || || || || | | |||||||||||||||||| || || | | || Sbjct 7446083 AGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAA 7446024 Query 33238 CAAATCT 33244 ||||||| Sbjct 7446023 CAAATCT 7446017 >seq1207 Length=20116479 Score = 190 bits (210), Expect = 3e-43 Identities = 368/540 (68%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 63067 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63125 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 7939247 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCAC 7939188 Query 63126 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 7939187 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 7939128 Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63245 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 7939127 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 7939068 Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 63305 ||| || | || | || | | ||| || | || ||| ||||| |||||||||| Sbjct 7939067 GAGCAGTACTGTTGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCC 7939008 Query 63306 CTGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63363 | | ||| | | || | || ||| | | |||| ||||| ||||| || || Sbjct 7939007 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCAATTCCACCAGC 7938950 Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423 |||| ||||| | ||| ||| |||| | ||||||||| |||||||| ||||| ||||| Sbjct 7938949 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATC 7938890 Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483 |||| |||| | ||| ||||| ||||| || | | || || |||||||| | Sbjct 7938889 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAG 7938830 Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 || || ||||| ||| ||||| ||||| || | |||||||||||||||||||| | Sbjct 7938829 AGTGGGTGAAGCATGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGC 7938770 Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 7938769 ATCAAGATCCTCACCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622360873200