Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1207 100 2e-16 seq1213 95.1 1e-14 >seq1207 Length=20116479 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| ||| | || || ||| | || ||| | || || ||| | Sbjct 17430966 AATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17430907 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | |||||| |||| || |||| ||| || ||||| || || || || || | Sbjct 17430906 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAG-GATAAAGAGGGTATACCGCCAGATC 17430848 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || |||| || || || || |||||||| |||| || || | ||| |||| Sbjct 17430847 AGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACA 17430788 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| || || || || || | || ||||| ||| ||||||| Sbjct 17430787 ATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGG 17430739 >seq1213 Length=7437389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||||||| | || |||||| || | Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| || || Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || || ||||| | ||||| | ||| |||||| Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCT 1844329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433321572797855