Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1209 233 2e-56 >seq1209 Length=14622995 Score = 233 bits (258), Expect = 2e-56 Identities = 398/576 (69%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| ||||| || | ||||| || || |||||||| |||||||| || | Sbjct 7446604 GCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAG 7446545 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||||| | || || || |||||||||||||| || |||||||| ||||||||| || Sbjct 7446544 GCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAA 7446485 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 | ||||| || || || |||||||| | || || || | || || || || | Sbjct 7446484 AACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA---TGGGGCTTTCCTATT 7446428 Query 93271 G---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||| | | ||||||||||||||| || || ||| || || || | | || Sbjct 7446427 TGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGC 7446368 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 |||||| | | || || || | | ||| ||||| ||||| || | ||||| || Sbjct 7446367 GTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTA 7446308 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||| ||||| | || || | || | ||| | ||||| ||||| | ||| || | Sbjct 7446307 CATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGG 7446248 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || || ||||| | | |||| || || |||||||| || || ||||| || Sbjct 7446247 AATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGC 7446188 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 ||||||||||||||| | || ||| ||||| || |||| ||||| ||||| Sbjct 7446187 TGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCA 7446128 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| | || || || | | ||||||||| || || |||||||| || || | ||||| Sbjct 7446127 ATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTT 7446068 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGG 93663 ||||| | ||||| ||||| |||||||| || || Sbjct 7446067 CTTGTAAAACTCCCAGATGTCATGATATTGGATGGG 7446032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556852328755080