Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 233 2e-56
>seq1209
Length=14622995
Score = 233 bits (258), Expect = 2e-56
Identities = 398/576 (69%), Gaps = 6/576 (1%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||| ||||| || | ||||| || || |||||||| |||||||| || |
Sbjct 7446604 GCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAG 7446545
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||||| | || || || |||||||||||||| || |||||||| ||||||||| ||
Sbjct 7446544 GCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAA 7446485
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
| ||||| || || || |||||||| | || || || | || || || || |
Sbjct 7446484 AACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTA---TGGGGCTTTCCTATT 7446428
Query 93271 G---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327
||||| | | ||||||||||||||| || || ||| || || || | | ||
Sbjct 7446427 TGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGC 7446368
Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387
|||||| | | || || || | | ||| ||||| ||||| || | ||||| ||
Sbjct 7446367 GTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTA 7446308
Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447
|||||| ||||| | || || | || | ||| | ||||| ||||| | ||| || |
Sbjct 7446307 CATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGG 7446248
Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507
|| || ||||| | | |||| || || |||||||| || || ||||| ||
Sbjct 7446247 AATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGC 7446188
Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567
||||||||||||||| | || ||| ||||| || |||| ||||| |||||
Sbjct 7446187 TGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCA 7446128
Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
||| | || || || | | ||||||||| || || |||||||| || || | |||||
Sbjct 7446127 ATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTT 7446068
Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGG 93663
||||| | ||||| ||||| |||||||| || ||
Sbjct 7446067 CTTGTAAAACTCCCAGATGTCATGATATTGGATGGG 7446032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556852328755080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |