Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 127 2e-24
seq1213 113 4e-20
>seq1207
Length=20116479
Score = 127 bits (140), Expect = 2e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| | || || ||||| | |||||||| || || | |
Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||| | | || || | || || |||||||||||||||||||||||||| |||||
Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| ||||| ||||| |||||| || || | || || |||||
Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| || || || |||
Sbjct 13120264 ATTCAGAAGGAGTCAACC 13120247
>seq1213
Length=7437389
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| ||||| ||||| | |
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| | | || || | ||| || || || ||||||||||| |||||||| |||||
Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| ||||| || || || ||||| || || ||||||| | ||||| ||||||
Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 1844526 ATTCAGAAGGAGTCGAC 1844542
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| ||||| ||||| | |
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| | | || || | || || || || ||||||||||| |||||||| |||||
Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| ||||| || || || ||||| || || ||||||| | ||||| ||||||
Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447
|| || || || || || | ||| | || |||| | ||||| ||||
Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGGTT 1844802
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| ||||| ||||| | |
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| | | || || | || || || || ||||||||||| |||||||| |||||
Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| ||||| || || || ||||| || || ||||||| | ||||| ||||||
Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 1837916 ATTCAGAAGGAGTCGAC 1837900
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| || || | || || || || |||| ||||| ||||| | |
Sbjct 1844117 GATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAG 1844176
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| | | || || | || || || || ||||||||||| |||||||| |||||
Sbjct 1844177 TGACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844236
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| ||||| ||||| || || || ||||| || || ||||||| | ||||| |||||
Sbjct 1844237 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844296
Query 22398 CATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 1844297 TATTCAGAAGGAGTCGAC 1844314
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||| || || |||||||| ||||| || ||||| ||||| || || ||
Sbjct 1838240 AAGATACAAGACAAAGAAGGCATTCCACCGGATCAGCAGCGTCTGATATTCGCGGGAAAG 1838181
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||||| || || ||||||| | ||||| ||||||||||| || || || ||
Sbjct 1838180 CAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACATTCAGAAGGAGTCGAC 1838128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419721774515605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |